Zinc in PDB 6x38: Crystal Structure of the FN5 Domain of Drosophila Lar
Enzymatic activity of Crystal Structure of the FN5 Domain of Drosophila Lar
All present enzymatic activity of Crystal Structure of the FN5 Domain of Drosophila Lar:
3.1.3.48;
Protein crystallography data
The structure of Crystal Structure of the FN5 Domain of Drosophila Lar, PDB code: 6x38
was solved by
S.Bouyain,
J.E.Kawakami,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
32.81 /
1.30
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
40.58,
42.658,
51.347,
90,
90,
90
|
R / Rfree (%)
|
16.7 /
18.2
|
Zinc Binding Sites:
The binding sites of Zinc atom in the Crystal Structure of the FN5 Domain of Drosophila Lar
(pdb code 6x38). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Crystal Structure of the FN5 Domain of Drosophila Lar, PDB code: 6x38:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 6x38
Go back to
Zinc Binding Sites List in 6x38
Zinc binding site 1 out
of 2 in the Crystal Structure of the FN5 Domain of Drosophila Lar
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Crystal Structure of the FN5 Domain of Drosophila Lar within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn901
b:9.7
occ:0.77
|
OD2
|
A:ASP796
|
1.9
|
14.4
|
1.0
|
ND1
|
A:HIS745
|
2.0
|
8.6
|
1.0
|
NE2
|
A:HIS747
|
2.0
|
12.7
|
1.0
|
O
|
A:HOH1087
|
2.0
|
13.9
|
0.9
|
CG
|
A:ASP796
|
2.7
|
14.6
|
1.0
|
OD1
|
A:ASP796
|
2.7
|
16.8
|
1.0
|
CE1
|
A:HIS747
|
2.8
|
13.4
|
1.0
|
HE1
|
A:HIS747
|
2.9
|
16.1
|
1.0
|
CE1
|
A:HIS745
|
3.0
|
7.9
|
1.0
|
CG
|
A:HIS745
|
3.0
|
7.4
|
1.0
|
HB2
|
A:HIS745
|
3.1
|
9.3
|
1.0
|
HE1
|
A:HIS745
|
3.1
|
9.4
|
1.0
|
CD2
|
A:HIS747
|
3.2
|
12.8
|
1.0
|
HB3
|
A:HIS745
|
3.2
|
9.3
|
1.0
|
CB
|
A:HIS745
|
3.3
|
7.7
|
1.0
|
HD2
|
A:HIS747
|
3.4
|
15.4
|
1.0
|
HG3
|
A:LYS764
|
3.8
|
17.1
|
1.0
|
O
|
A:HOH1007
|
4.0
|
18.5
|
1.0
|
ND1
|
A:HIS747
|
4.0
|
12.7
|
1.0
|
NE2
|
A:HIS745
|
4.1
|
8.3
|
1.0
|
CB
|
A:ASP796
|
4.1
|
16.3
|
1.0
|
CD2
|
A:HIS745
|
4.1
|
8.0
|
1.0
|
CG
|
A:HIS747
|
4.2
|
11.1
|
1.0
|
HG2
|
A:LYS764
|
4.3
|
17.1
|
1.0
|
HB2
|
A:ASP796
|
4.4
|
19.5
|
1.0
|
HD21
|
A:LEU791
|
4.4
|
19.8
|
1.0
|
HB3
|
A:ASP796
|
4.4
|
19.5
|
1.0
|
HB3
|
A:ALA789
|
4.4
|
11.5
|
1.0
|
HH21
|
A:ARG799
|
4.5
|
17.1
|
1.0
|
CG
|
A:LYS764
|
4.5
|
14.3
|
1.0
|
HD23
|
A:LEU791
|
4.6
|
19.8
|
1.0
|
HD1
|
A:HIS747
|
4.8
|
15.2
|
1.0
|
CA
|
A:HIS745
|
4.8
|
6.8
|
1.0
|
HD3
|
A:LYS764
|
4.8
|
19.1
|
1.0
|
HE2
|
A:LYS764
|
4.9
|
19.9
|
1.0
|
CD2
|
A:LEU791
|
4.9
|
16.5
|
1.0
|
HD2
|
A:HIS745
|
5.0
|
9.7
|
1.0
|
O
|
A:HOH1068
|
5.0
|
18.1
|
1.0
|
|
Zinc binding site 2 out
of 2 in 6x38
Go back to
Zinc Binding Sites List in 6x38
Zinc binding site 2 out
of 2 in the Crystal Structure of the FN5 Domain of Drosophila Lar
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Crystal Structure of the FN5 Domain of Drosophila Lar within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn902
b:8.3
occ:1.00
|
OD1
|
A:ASP766
|
2.0
|
10.9
|
1.0
|
NE2
|
A:HIS745
|
2.0
|
8.3
|
1.0
|
CG
|
A:ASP766
|
2.9
|
11.0
|
1.0
|
CD2
|
A:HIS745
|
3.0
|
8.0
|
1.0
|
CE1
|
A:HIS745
|
3.0
|
7.9
|
1.0
|
OD2
|
A:ASP766
|
3.0
|
15.1
|
1.0
|
HD2
|
A:HIS745
|
3.2
|
9.7
|
1.0
|
HE1
|
A:HIS745
|
3.2
|
9.4
|
1.0
|
HZ3
|
A:LYS764
|
3.3
|
24.9
|
1.0
|
HE2
|
A:LYS764
|
3.6
|
19.9
|
1.0
|
HD11
|
A:LEU791
|
3.6
|
15.0
|
1.0
|
HD3
|
A:LYS764
|
3.7
|
19.1
|
1.0
|
HD13
|
A:LEU791
|
3.9
|
15.0
|
1.0
|
HD21
|
A:LEU791
|
4.0
|
19.8
|
1.0
|
NZ
|
A:LYS764
|
4.0
|
20.7
|
1.0
|
ND1
|
A:HIS745
|
4.1
|
8.6
|
1.0
|
CG
|
A:HIS745
|
4.1
|
7.4
|
1.0
|
CE
|
A:LYS764
|
4.2
|
16.6
|
1.0
|
CB
|
A:ASP766
|
4.2
|
10.4
|
1.0
|
CD1
|
A:LEU791
|
4.2
|
12.5
|
1.0
|
HZ1
|
A:LYS764
|
4.2
|
24.9
|
1.0
|
O
|
A:HOH1060
|
4.4
|
17.6
|
1.0
|
HA
|
A:ASP766
|
4.4
|
11.9
|
1.0
|
CD
|
A:LYS764
|
4.4
|
15.9
|
1.0
|
HB3
|
A:ASP766
|
4.4
|
12.4
|
1.0
|
HD22
|
A:LEU791
|
4.6
|
19.8
|
1.0
|
CD2
|
A:LEU791
|
4.7
|
16.5
|
1.0
|
HZ2
|
A:LYS764
|
4.8
|
24.9
|
1.0
|
HB2
|
A:ASP766
|
4.8
|
12.4
|
1.0
|
CA
|
A:ASP766
|
4.9
|
9.9
|
1.0
|
HD12
|
A:LEU791
|
4.9
|
15.0
|
1.0
|
HD2
|
A:LYS764
|
4.9
|
19.1
|
1.0
|
|
Reference:
S.Bouyain,
J.E.Kawakami.
Complex Genetic Drosophila Lar-Integrin Interactions Mediate Actin Patterning in Muscle Tissue To Be Published.
Page generated: Mon Jul 12 16:40:47 2021
|