Zinc in PDB 6wmr: F. Tularensis RNAPS70-(Mgla-Sspa)-Igla Dna Complex

Enzymatic activity of F. Tularensis RNAPS70-(Mgla-Sspa)-Igla Dna Complex

All present enzymatic activity of F. Tularensis RNAPS70-(Mgla-Sspa)-Igla Dna Complex:
2.7.7.6;

Other elements in 6wmr:

The structure of F. Tularensis RNAPS70-(Mgla-Sspa)-Igla Dna Complex also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the F. Tularensis RNAPS70-(Mgla-Sspa)-Igla Dna Complex (pdb code 6wmr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the F. Tularensis RNAPS70-(Mgla-Sspa)-Igla Dna Complex, PDB code: 6wmr:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6wmr

Go back to Zinc Binding Sites List in 6wmr
Zinc binding site 1 out of 2 in the F. Tularensis RNAPS70-(Mgla-Sspa)-Igla Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of F. Tularensis RNAPS70-(Mgla-Sspa)-Igla Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1502

b:0.0
occ:1.00
SG D:CYS70 2.2 0.5 1.0
SG D:CYS83 2.2 0.9 1.0
SG D:CYS86 2.3 0.6 1.0
SG D:CYS68 2.3 0.6 1.0
CB D:CYS83 3.3 0.9 1.0
CB D:CYS70 3.4 0.5 1.0
CB D:CYS68 3.5 0.6 1.0
N D:CYS86 3.5 0.6 1.0
N D:CYS70 3.7 0.5 1.0
CB D:CYS86 3.9 0.6 1.0
O D:CYS86 4.0 0.6 1.0
CA D:CYS70 4.1 0.5 1.0
CB D:ARG85 4.1 0.5 1.0
CA D:CYS86 4.2 0.6 1.0
N D:ARG85 4.4 0.5 1.0
N D:LEU69 4.5 0.4 1.0
C D:CYS86 4.5 0.6 1.0
C D:ARG85 4.5 0.5 1.0
C D:CYS70 4.5 0.5 1.0
CA D:ARG85 4.6 0.5 1.0
N D:GLY71 4.6 1.0 1.0
CA D:CYS83 4.7 0.9 1.0
CB D:LYS72 4.8 1.0 1.0
N D:LYS72 4.8 1.0 1.0
CA D:CYS68 4.8 0.6 1.0
C D:LEU69 4.8 0.4 1.0
C D:CYS68 4.8 0.6 1.0
N D:GLU84 4.9 1.0 1.0

Zinc binding site 2 out of 2 in 6wmr

Go back to Zinc Binding Sites List in 6wmr
Zinc binding site 2 out of 2 in the F. Tularensis RNAPS70-(Mgla-Sspa)-Igla Dna Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of F. Tularensis RNAPS70-(Mgla-Sspa)-Igla Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1503

b:0.9
occ:1.00
SG D:CYS884 2.2 0.2 1.0
SG D:CYS891 2.2 0.2 1.0
SG D:CYS811 2.3 0.7 1.0
SG D:CYS894 2.4 98.7 1.0
CB D:CYS811 2.8 0.7 1.0
CB D:CYS891 2.8 0.2 1.0
CB D:CYS884 3.3 0.2 1.0
CB D:CYS894 3.4 98.7 1.0
CA D:CYS891 3.8 0.2 1.0
N D:CYS891 3.8 0.2 1.0
CA D:CYS884 3.9 0.2 1.0
N D:CYS811 3.9 0.7 1.0
NH2 D:ARG879 3.9 0.0 1.0
CA D:CYS811 3.9 0.7 1.0
N D:CYS894 4.1 98.7 1.0
N D:LYS885 4.2 0.6 1.0
CA D:CYS894 4.4 98.7 1.0
C D:CYS891 4.4 0.2 1.0
O D:CYS891 4.5 0.2 1.0
C D:CYS884 4.6 0.2 1.0
CD2 D:LEU890 4.8 99.2 1.0
CZ D:ARG879 4.9 0.0 1.0
C D:CYS811 4.9 0.7 1.0

Reference:

B.A.Travis, K.M.Ramsey, S.M.Prezioso, T.Tallo, J.M.Wandzilak, A.Hsu, M.Borgnia, A.Bartesaghi, S.L.Dove, R.G.Brennan, M.A.Schumacher. Structural Basis For Virulence Activation of Francisella Tularensis. Mol.Cell 2020.
ISSN: ISSN 1097-2765
PubMed: 33217319
DOI: 10.1016/J.MOLCEL.2020.10.035
Page generated: Wed Dec 16 13:05:28 2020

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