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Zinc in PDB 6w12: Structure of the Crd of CLEC10A

Protein crystallography data

The structure of Structure of the Crd of CLEC10A, PDB code: 6w12 was solved by G.Birrane, P.V.Murphy, A.Gabba, J.G.Luz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.58 / 2.00
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 52.155, 52.155, 112.667, 90, 90, 120
R / Rfree (%) 16.8 / 19.6

Other elements in 6w12:

The structure of Structure of the Crd of CLEC10A also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms
Calcium (Ca) 6 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of the Crd of CLEC10A (pdb code 6w12). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of the Crd of CLEC10A, PDB code: 6w12:

Zinc binding site 1 out of 1 in 6w12

Go back to Zinc Binding Sites List in 6w12
Zinc binding site 1 out of 1 in the Structure of the Crd of CLEC10A


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of the Crd of CLEC10A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn412

b:15.6
occ:1.00
NE2 A:HIS215 2.0 10.3 1.0
O A:HOH513 2.1 17.0 1.0
CL A:CL409 2.2 17.3 1.0
CL A:CL410 2.3 17.2 1.0
CD2 A:HIS215 2.9 11.1 1.0
CE1 A:HIS215 3.0 10.7 1.0
O A:HOH601 3.7 27.7 1.0
OD2 A:ASP252 4.1 19.1 1.0
CG A:HIS215 4.1 11.0 1.0
ND1 A:HIS215 4.1 9.8 1.0
O A:HOH559 4.3 13.9 1.0
N A:GLY307 4.4 25.6 1.0
CA A:ALA306 4.6 17.6 1.0
O A:GLU305 4.6 9.6 1.0
CB A:ASP252 4.7 14.4 1.0
C A:ALA306 4.8 16.8 1.0
CG A:ASP252 4.9 15.5 1.0
C A:GLU305 5.0 12.1 1.0

Reference:

G.Birrane, P.V.Murphy. Structure of the Carbohydrate Recognition Domain of CLEC10A To Be Published.
Page generated: Sat Apr 3 18:26:59 2021

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