Zinc in PDB 6v9q: Cryo-Em Structure of Cascade-Tniq Binary Complex

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Cascade-Tniq Binary Complex (pdb code 6v9q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Cryo-Em Structure of Cascade-Tniq Binary Complex, PDB code: 6v9q:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 6v9q

Go back to Zinc Binding Sites List in 6v9q
Zinc binding site 1 out of 4 in the Cryo-Em Structure of Cascade-Tniq Binary Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Cascade-Tniq Binary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn401

b:0.2
occ:1.00
ND1 J:HIS153 2.2 0.7 1.0
SG J:CYS150 2.5 0.2 1.0
CB J:SER152 2.6 0.4 1.0
CE1 J:HIS153 2.8 0.7 1.0
CA J:SER152 3.1 0.4 1.0
C J:SER152 3.2 0.4 1.0
N J:HIS153 3.2 0.7 1.0
CG J:HIS153 3.3 0.7 1.0
N J:SER152 3.3 0.4 1.0
SG J:CYS131 3.5 0.5 1.0
OG J:SER152 3.6 0.4 1.0
O J:SER152 3.9 0.4 1.0
NE2 J:HIS153 3.9 0.7 1.0
CB J:HIS153 3.9 0.7 1.0
CA J:HIS153 4.1 0.7 1.0
CD2 J:HIS153 4.2 0.7 1.0
CB J:CYS150 4.3 0.2 1.0
C J:HIS151 4.6 0.2 1.0
N J:HIS151 4.8 0.2 1.0

Zinc binding site 2 out of 4 in 6v9q

Go back to Zinc Binding Sites List in 6v9q
Zinc binding site 2 out of 4 in the Cryo-Em Structure of Cascade-Tniq Binary Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Cascade-Tniq Binary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn402

b:0.7
occ:1.00
SG J:CYS161 2.8 0.8 1.0
O J:PRO184 3.1 0.8 1.0
SG J:CYS181 3.2 0.8 1.0
O J:GLU183 3.5 0.5 1.0
CB J:GLU183 3.6 0.5 1.0
C J:PRO184 3.7 0.8 1.0
CA J:ILE185 3.8 0.8 1.0
C J:GLU183 3.8 0.5 1.0
N J:ILE185 4.0 0.8 1.0
CA J:GLU183 4.3 0.5 1.0
CG1 J:ILE185 4.4 0.8 1.0
N J:PRO184 4.5 0.8 1.0
N J:SER162 4.5 99.8 1.0
CB J:CYS161 4.6 0.8 1.0
CB J:CYS178 4.6 0.5 1.0
CB J:ILE185 4.6 0.8 1.0
CA J:PRO184 4.6 0.8 1.0
N J:THR186 4.7 0.3 1.0
CB J:SER162 4.7 99.8 1.0
N J:GLU183 4.7 0.5 1.0
C J:ILE185 4.8 0.8 1.0
CB J:CYS181 4.8 0.8 1.0
CG J:GLU183 4.8 0.5 1.0
OG J:SER162 4.8 99.8 1.0

Zinc binding site 3 out of 4 in 6v9q

Go back to Zinc Binding Sites List in 6v9q
Zinc binding site 3 out of 4 in the Cryo-Em Structure of Cascade-Tniq Binary Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of Cascade-Tniq Binary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn401

b:0.9
occ:1.00
SG I:CYS128 2.4 93.8 1.0
SG I:CYS150 2.5 95.0 1.0
SG I:CYS131 2.5 93.8 1.0
CB I:CYS128 2.7 93.8 1.0
CB I:CYS150 3.1 95.0 1.0
ND1 I:HIS153 3.7 96.2 1.0
CB I:CYS131 3.7 93.8 1.0
CA I:CYS128 4.2 93.8 1.0
CA I:CYS150 4.3 95.0 1.0
N I:CYS131 4.4 93.8 1.0
CZ2 I:TRP142 4.4 84.1 1.0
CE1 I:HIS153 4.4 96.2 1.0
CG I:HIS153 4.5 96.2 1.0
CB I:HIS153 4.6 96.2 1.0
CA I:CYS131 4.7 93.8 1.0
O I:CYS128 4.7 93.8 1.0
C I:CYS128 4.8 93.8 1.0
CG1 I:VAL155 4.9 92.0 1.0
NE1 I:TRP142 5.0 84.1 1.0

Zinc binding site 4 out of 4 in 6v9q

Go back to Zinc Binding Sites List in 6v9q
Zinc binding site 4 out of 4 in the Cryo-Em Structure of Cascade-Tniq Binary Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Cryo-Em Structure of Cascade-Tniq Binary Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn402

b:0.7
occ:1.00
SG I:CYS178 2.5 94.5 1.0
SG I:CYS181 2.5 96.7 1.0
SG I:CYS161 2.6 97.9 1.0
CB I:CYS161 3.2 97.9 1.0
CB I:CYS178 3.3 94.5 1.0
CB I:CYS181 3.6 96.7 1.0
CB I:CYS163 3.6 97.3 1.0
N I:CYS181 3.9 96.7 1.0
SG I:CYS163 4.0 97.3 1.0
N I:CYS163 4.1 97.3 1.0
CA I:CYS181 4.4 96.7 1.0
CA I:CYS163 4.4 97.3 1.0
CA I:CYS161 4.6 97.9 1.0
N I:SER162 4.6 97.5 1.0
CB I:LYS180 4.8 95.8 1.0
CA I:CYS178 4.8 94.5 1.0
CB I:LYS165 4.8 94.8 1.0
N I:LYS180 4.9 95.8 1.0
C I:CYS161 4.9 97.9 1.0

Reference:

N.Jia, W.Xie, M.J.De La Cruz, E.T.Eng, D.J.Patel. Structure-Function Insights Into the Initial Step of Dna Integration By A Crispr-Cas-Transposon Complex. Cell Res. 2020.
ISSN: ISSN 1001-0602
PubMed: 31925391
DOI: 10.1038/S41422-019-0272-2
Page generated: Wed Dec 16 13:01:25 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy