Zinc in PDB 6v0v: Cryo-Em Structure of Mouse Wt RAG1/2 Nfc Complex (DNA0)

All present enzymatic activity of Cryo-Em Structure of Mouse Wt RAG1/2 Nfc Complex (DNA0):
2.3.2.27;

The structure of Cryo-Em Structure of Mouse Wt RAG1/2 Nfc Complex (DNA0) also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of Mouse Wt RAG1/2 Nfc Complex (DNA0) (pdb code 6v0v). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Mouse Wt RAG1/2 Nfc Complex (DNA0), PDB code: 6v0v:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Mouse Wt RAG1/2 Nfc Complex (DNA0)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Mouse Wt RAG1/2 Nfc Complex (DNA0) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1103 b:0.0 occ:1.00 NE2 A:HIS937 2.1 87.3 1.0 NE2 A:HIS942 2.1 85.4 1.0 SG A:CYS730 2.4 86.9 1.0 CE1 A:HIS942 2.4 85.4 1.0 SG A:CYS727 2.5 82.8 1.0 CE1 A:HIS937 2.8 87.3 1.0 CB A:CYS727 3.0 82.8 1.0 CD2 A:HIS937 3.1 87.3 1.0 CD2 A:HIS942 3.2 85.4 1.0 ND1 A:HIS942 3.5 85.4 1.0 CB A:CYS730 3.6 86.9 1.0 ND1 A:HIS937 3.9 87.3 1.0 CG A:HIS942 3.9 85.4 1.0 N A:CYS730 4.0 86.9 1.0 CG A:HIS937 4.1 87.3 1.0 CB A:ALA941 4.2 88.5 1.0 CA A:CYS730 4.3 86.9 1.0 ND1 A:HIS744 4.4 91.8 1.0 CA A:CYS727 4.4 82.8 1.0 C A:CYS730 4.8 86.9 1.0 CB A:HIS744 4.8 91.8 1.0 CG2 A:THR732 4.9 93.7 1.0 O A:HIS937 4.9 87.3 1.0 CB A:LEU729 5.0 80.4 1.0 CG A:HIS744 5.0 91.8 1.0 O A:SER745 5.0 92.6 1.0 C A:LEU729 5.0 80.4 1.0 O A:CYS730 5.0 86.9 1.0

X.Chen, Y.Cui, Z.H.Zhou, W.Yang, M.Gellert. Cutting Antiparallel Dna Strands in A Single Active Site Nat.Struct.Mol.Biol. 2020.
ISSN: ESSN 1545-9985