Zinc in PDB 6uro: Cryo-Em Structure of Human CPSF160-WDR33-CPSF30-Pas Rna-CSTF77 Complex

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Human CPSF160-WDR33-CPSF30-Pas Rna-CSTF77 Complex (pdb code 6uro). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Cryo-Em Structure of Human CPSF160-WDR33-CPSF30-Pas Rna-CSTF77 Complex, PDB code: 6uro:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 6uro

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Zinc binding site 1 out of 3 in the Cryo-Em Structure of Human CPSF160-WDR33-CPSF30-Pas Rna-CSTF77 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Human CPSF160-WDR33-CPSF30-Pas Rna-CSTF77 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn301

b:30.0
occ:1.00
NE2 C:HIS59 2.2 39.9 1.0
CE1 C:HIS59 2.4 39.9 1.0
SG C:CYS41 2.5 40.0 1.0
SG C:CYS55 2.5 40.0 1.0
CB C:CYS41 3.4 40.0 1.0
CD2 C:HIS59 3.5 39.9 1.0
ND1 C:HIS59 3.6 39.9 1.0
CB C:CYS55 3.8 40.0 1.0
CB C:CYS49 4.0 40.0 1.0
CG C:HIS59 4.1 39.9 1.0
SG C:CYS49 4.3 40.0 1.0
O C:PHE57 4.5 30.0 1.0
O C:LYS51 4.7 30.0 1.0
CB C:PHE44 4.8 40.6 1.0
CA C:CYS41 4.9 30.0 1.0

Zinc binding site 2 out of 3 in 6uro

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Zinc binding site 2 out of 3 in the Cryo-Em Structure of Human CPSF160-WDR33-CPSF30-Pas Rna-CSTF77 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Human CPSF160-WDR33-CPSF30-Pas Rna-CSTF77 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn302

b:30.0
occ:1.00
NE2 C:HIS86 2.2 46.1 1.0
SG C:CYS68 2.5 30.0 1.0
SG C:CYS82 3.0 53.0 1.0
CB C:CYS68 3.0 30.0 1.0
CD2 C:HIS86 3.1 46.1 1.0
CE1 C:HIS86 3.1 46.1 1.0
SG C:CYS76 3.3 69.5 1.0
CB C:TRP71 3.7 55.1 1.0
N6 D:A2 4.0 20.0 1.0
CB C:CYS82 4.0 53.0 1.0
CD1 C:TRP71 4.1 55.1 1.0
CG C:TRP71 4.2 55.1 1.0
ND1 C:HIS86 4.2 46.1 1.0
CB C:CYS76 4.3 69.5 1.0
CG C:HIS86 4.3 46.1 1.0
CA C:CYS68 4.5 33.5 1.0
CA C:TRP71 4.6 40.1 1.0
N C:TRP71 4.7 41.9 1.0
CA C:CYS76 4.9 51.4 1.0
O C:PHE84 5.0 33.8 1.0

Zinc binding site 3 out of 3 in 6uro

Go back to Zinc Binding Sites List in 6uro
Zinc binding site 3 out of 3 in the Cryo-Em Structure of Human CPSF160-WDR33-CPSF30-Pas Rna-CSTF77 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryo-Em Structure of Human CPSF160-WDR33-CPSF30-Pas Rna-CSTF77 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn303

b:30.0
occ:1.00
NE2 C:HIS114 2.4 44.4 1.0
SG C:CYS110 2.5 37.4 1.0
SG C:CYS96 2.5 39.9 1.0
CE1 C:HIS114 3.2 44.4 1.0
CB C:CYS105 3.2 37.3 1.0
CB C:CYS110 3.3 37.4 1.0
CB C:CYS96 3.4 39.9 1.0
CD2 C:HIS114 3.5 44.4 1.0
N6 D:A5 4.0 20.0 1.0
OD1 C:ASN107 4.2 38.9 1.0
SG C:CYS105 4.3 37.3 1.0
ND1 C:HIS114 4.4 44.4 1.0
CA C:CYS105 4.4 27.6 1.0
CB C:TYR99 4.5 39.7 1.0
CG C:HIS114 4.5 44.4 1.0
CA C:CYS110 4.8 28.6 1.0
N C:TYR99 4.8 28.8 1.0
CA C:CYS96 4.9 29.3 1.0

Reference:

Y.Zhang, Y.Sun, Y.Shi, T.Walz, L.Tong. Structural Insights Into the Human Pre-Mrna 3'-End Processing Machinery To Be Published.
Page generated: Wed Dec 16 13:00:10 2020

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