Atomistry » Zinc » PDB 6twt-6uas » 6uaf
Atomistry »
  Zinc »
    PDB 6twt-6uas »
      6uaf »

Zinc in PDB 6uaf: Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Hydrolyzed Imipnem

Enzymatic activity of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Hydrolyzed Imipnem

All present enzymatic activity of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Hydrolyzed Imipnem:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Hydrolyzed Imipnem, PDB code: 6uaf was solved by Y.Kim, N.Maltseva, M.Endres, A.Joachimiak, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.31 / 1.90
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 104.835, 104.835, 98.627, 90.00, 90.00, 120.00
R / Rfree (%) 17.2 / 20.8

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Hydrolyzed Imipnem (pdb code 6uaf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Hydrolyzed Imipnem, PDB code: 6uaf:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6uaf

Go back to Zinc Binding Sites List in 6uaf
Zinc binding site 1 out of 2 in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Hydrolyzed Imipnem


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Hydrolyzed Imipnem within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:24.1
occ:1.00
OD2 A:ASP109 2.1 18.6 1.0
O A:HOH408 2.1 78.0 1.0
NE2 A:HIS246 2.1 23.3 1.0
NE2 A:HIS110 2.2 22.9 1.0
N4 A:HIW301 2.2 34.3 1.0
O32 A:HIW301 2.4 35.4 1.0
CG A:ASP109 3.0 19.5 1.0
C3 A:HIW301 3.0 40.2 1.0
CE1 A:HIS110 3.1 22.1 1.0
C31 A:HIW301 3.1 41.4 1.0
CD2 A:HIS246 3.1 23.5 1.0
CE1 A:HIS246 3.1 24.4 1.0
CD2 A:HIS110 3.2 18.2 1.0
OD1 A:ASP109 3.3 18.4 1.0
C5 A:HIW301 3.4 34.2 1.0
ZN A:ZN303 3.6 30.0 1.0
C6 A:HIW301 3.8 30.6 1.0
O62 A:HIW301 3.9 26.1 1.0
ND1 A:HIS110 4.2 15.2 1.0
ND1 A:HIS246 4.2 21.4 1.0
CG A:HIS246 4.3 19.1 1.0
CG A:HIS110 4.3 18.4 1.0
O31 A:HIW301 4.3 38.2 1.0
CB A:ASP109 4.3 18.6 1.0
C2 A:HIW301 4.4 42.4 1.0
C61 A:HIW301 4.4 32.3 1.0
NE2 A:HIS105 4.5 22.9 1.0
CE1 A:HIS105 4.5 18.0 1.0
C1 A:HIW301 4.6 34.9 1.0
OG A:SER206 4.6 17.1 1.0
NE2 A:HIS181 4.7 22.9 1.0

Zinc binding site 2 out of 2 in 6uaf

Go back to Zinc Binding Sites List in 6uaf
Zinc binding site 2 out of 2 in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Hydrolyzed Imipnem


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Hydrolyzed Imipnem within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn303

b:30.0
occ:1.00
O A:HOH408 1.9 78.0 1.0
NE2 A:HIS105 2.0 22.9 1.0
ND1 A:HIS107 2.2 23.9 1.0
NE2 A:HIS181 2.2 22.9 1.0
CD2 A:HIS181 2.9 16.5 1.0
CE1 A:HIS105 3.0 18.0 1.0
CD2 A:HIS105 3.0 20.1 1.0
CG A:HIS107 3.1 21.2 1.0
CE1 A:HIS107 3.2 23.8 1.0
CE1 A:HIS181 3.3 20.9 1.0
CB A:HIS107 3.3 17.3 1.0
O62 A:HIW301 3.4 26.1 1.0
O32 A:HIW301 3.5 35.4 1.0
ZN A:ZN302 3.6 24.1 1.0
CD2 A:HIS110 3.9 18.2 1.0
OD1 A:ASP109 4.0 18.4 1.0
ND1 A:HIS105 4.1 22.2 1.0
NE2 A:HIS110 4.1 22.9 1.0
CG A:HIS105 4.1 22.9 1.0
CG A:HIS181 4.2 17.1 1.0
C31 A:HIW301 4.2 41.4 1.0
CD2 A:HIS107 4.3 21.1 1.0
NE2 A:HIS107 4.3 18.2 1.0
ND1 A:HIS181 4.3 17.5 1.0
N4 A:HIW301 4.4 34.3 1.0
C3 A:HIW301 4.6 40.2 1.0
C61 A:HIW301 4.7 32.3 1.0
OD2 A:ASP109 4.8 18.6 1.0
CA A:HIS107 4.8 17.9 1.0
CG A:ASP109 4.8 19.5 1.0
C62 A:HIW301 4.9 29.2 1.0
CG2 A:THR182 5.0 15.1 1.0

Reference:

Y.Kim, N.Maltseva, M.Endres, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with Hydrolyzed Imipnem To Be Published.
Page generated: Tue Oct 29 08:29:38 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy