Zinc in PDB 6u75: Crystal Structure of S. Cerevisiae Sumo E3 Ligase SIZ2

The structure of Crystal Structure of S. Cerevisiae Sumo E3 Ligase SIZ2, PDB code: 6u75 was solved by C.D.Lima, L.Cappadocia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.00 / 2.63
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	61.916, 80.689, 76.527, 90.00, 95.00, 90.00
R / Rfree (%)	21.8 / 26.3

The binding sites of Zinc atom in the Crystal Structure of S. Cerevisiae Sumo E3 Ligase SIZ2 (pdb code 6u75). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of S. Cerevisiae Sumo E3 Ligase SIZ2, PDB code: 6u75:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of S. Cerevisiae Sumo E3 Ligase SIZ2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of S. Cerevisiae Sumo E3 Ligase SIZ2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:47.5 occ:1.00 NE2 A:HIS356 2.0 44.9 1.0 SG A:CYS380 2.3 56.6 1.0 SG A:CYS354 2.3 55.9 1.0 SG A:CYS377 2.3 56.6 1.0 CE1 A:HIS356 3.0 47.3 1.0 CD2 A:HIS356 3.1 56.8 1.0 CB A:CYS377 3.2 51.6 1.0 CB A:CYS354 3.2 54.9 1.0 CB A:CYS380 3.6 52.2 1.0 N A:CYS380 4.0 44.7 1.0 CA A:CYS354 4.0 48.5 1.0 ND1 A:HIS356 4.1 45.9 1.0 CG A:HIS356 4.2 50.6 1.0 CA A:CYS380 4.4 48.6 1.0 CA A:CYS377 4.6 45.2 1.0 CB A:ILE379 4.7 48.4 1.0 C A:CYS354 5.0 53.1 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of S. Cerevisiae Sumo E3 Ligase SIZ2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of S. Cerevisiae Sumo E3 Ligase SIZ2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn501 b:49.8 occ:1.00 NE2 B:HIS356 2.0 51.7 1.0 SG B:CYS380 2.3 63.8 1.0 SG B:CYS354 2.3 41.4 1.0 SG B:CYS377 2.3 44.4 1.0 CD2 B:HIS356 3.0 53.3 1.0 CE1 B:HIS356 3.0 51.3 1.0 CB B:CYS377 3.2 50.4 1.0 CB B:CYS354 3.2 48.6 1.0 CB B:CYS380 3.5 51.2 1.0 N B:CYS380 3.9 52.4 1.0 ND1 B:HIS356 4.1 43.9 1.0 CA B:CYS354 4.1 60.6 1.0 CG B:HIS356 4.1 51.0 1.0 CA B:CYS380 4.3 51.4 1.0 CB B:ILE379 4.6 37.4 1.0 CA B:CYS377 4.7 40.4 1.0 OG1 B:THR351 5.0 64.0 1.0 C B:ILE379 5.0 48.1 1.0

L.Cappadocia, C.D.Lima. Dna Architecture Templates Sumo Modification of the Single-Stranded Dna Binding Protein Rpa By the E3 Ligase SIZ2 Tba.