Zinc in PDB 6u4m: Solution Structure of Paxillin LIM4

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of Paxillin LIM4 (pdb code 6u4m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of Paxillin LIM4, PDB code: 6u4m:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6u4m

Go back to Zinc Binding Sites List in 6u4m
Zinc binding site 1 out of 2 in the Solution Structure of Paxillin LIM4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of Paxillin LIM4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:0.0
occ:1.00
ND1 A:HIS569 2.0 0.0 1.0
ND1 A:HIS572 2.0 0.0 1.0
SG A:CYS552 2.3 0.0 1.0
SG A:CYS549 2.3 0.0 1.0
HB2 A:CYS552 2.5 0.0 1.0
HB2 A:HIS569 2.7 0.0 1.0
HB3 A:CYS549 2.8 0.0 1.0
CB A:CYS552 2.9 0.0 1.0
CE1 A:HIS572 3.0 0.0 1.0
CE1 A:HIS569 3.0 0.0 1.0
CB A:CYS549 3.0 0.0 1.0
CG A:HIS569 3.0 0.0 1.0
CG A:HIS572 3.1 0.0 1.0
HB2 A:HIS572 3.1 0.0 1.0
HE1 A:HIS572 3.2 0.0 1.0
HE1 A:HIS569 3.2 0.0 1.0
H A:HIS569 3.3 0.0 1.0
HB2 A:CYS549 3.3 0.0 1.0
CB A:HIS569 3.4 0.0 1.0
CB A:HIS572 3.4 0.0 1.0
HB3 A:CYS552 3.5 0.0 1.0
HB3 A:HIS572 3.6 0.0 1.0
N A:HIS569 4.1 0.0 1.0
CA A:CYS552 4.1 0.0 1.0
H A:CYS552 4.1 0.0 1.0
HB3 A:HIS569 4.1 0.0 1.0
CD2 A:HIS569 4.1 0.0 1.0
NE2 A:HIS572 4.2 0.0 1.0
NE2 A:HIS569 4.2 0.0 1.0
CD2 A:HIS572 4.2 0.0 1.0
N A:CYS552 4.2 0.0 1.0
CA A:HIS569 4.3 0.0 1.0
CA A:CYS549 4.4 0.0 1.0
O A:CYS549 4.5 0.0 1.0
HA A:CYS552 4.5 0.0 1.0
C A:CYS549 4.7 0.0 1.0
HA A:PHE568 4.9 0.0 1.0
CA A:HIS572 4.9 0.0 1.0
H A:CYS549 4.9 0.0 1.0
HA A:HIS569 4.9 0.0 1.0
HG12 A:ILE556 4.9 0.0 1.0

Zinc binding site 2 out of 2 in 6u4m

Go back to Zinc Binding Sites List in 6u4m
Zinc binding site 2 out of 2 in the Solution Structure of Paxillin LIM4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of Paxillin LIM4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn702

b:0.0
occ:1.00
SG A:CYS596 2.3 0.0 1.0
SG A:CYS575 2.3 0.0 1.0
SG A:CYS578 2.3 0.0 1.0
SG A:CYS599 2.3 0.0 1.0
HB3 A:CYS575 2.6 0.0 1.0
CB A:CYS575 2.6 0.0 1.0
HB2 A:CYS575 2.6 0.0 1.0
H A:CYS596 2.7 0.0 1.0
H A:CYS578 3.1 0.0 1.0
HB2 A:CYS599 3.1 0.0 1.0
CB A:CYS599 3.3 0.0 1.0
HB3 A:PHE577 3.3 0.0 1.0
N A:CYS596 3.6 0.0 1.0
HB3 A:CYS599 3.6 0.0 1.0
CB A:CYS596 3.7 0.0 1.0
HD3 A:LYS580 3.8 0.0 1.0
HB2 A:CYS596 3.8 0.0 1.0
CB A:CYS578 3.8 0.0 1.0
HA A:TYR595 3.9 0.0 1.0
N A:CYS578 3.9 0.0 1.0
HB3 A:CYS578 4.0 0.0 1.0
CA A:CYS575 4.1 0.0 1.0
CB A:PHE577 4.2 0.0 1.0
HG2 A:LYS580 4.3 0.0 1.0
HD12 A:LEU582 4.3 0.0 1.0
HD1 A:TYR595 4.3 0.0 1.0
CA A:CYS596 4.3 0.0 1.0
H A:LEU579 4.3 0.0 1.0
HB2 A:PHE577 4.3 0.0 1.0
HD13 A:LEU582 4.4 0.0 1.0
H A:PHE577 4.5 0.0 1.0
CA A:CYS578 4.5 0.0 1.0
HB3 A:CYS596 4.5 0.0 1.0
HD1 A:PHE577 4.6 0.0 1.0
H A:CYS599 4.6 0.0 1.0
CA A:CYS599 4.6 0.0 1.0
HA A:CYS575 4.6 0.0 1.0
HB2 A:CYS578 4.6 0.0 1.0
C A:TYR595 4.6 0.0 1.0
CA A:TYR595 4.7 0.0 1.0
CD A:LYS580 4.7 0.0 1.0
C A:CYS575 4.7 0.0 1.0
H A:CYS575 4.8 0.0 1.0
HE3 A:LYS580 4.8 0.0 1.0
CD1 A:LEU582 4.8 0.0 1.0
HA A:CYS599 4.9 0.0 1.0
H A:LYS580 4.9 0.0 1.0
C A:PHE577 4.9 0.0 1.0
O A:CYS575 5.0 0.0 1.0
N A:PHE577 5.0 0.0 1.0
N A:CYS575 5.0 0.0 1.0
N A:CYS599 5.0 0.0 1.0
CA A:PHE577 5.0 0.0 1.0
N A:LEU579 5.0 0.0 1.0

Reference:

L.Zhu, H.Liu, F.Lu, J.Yang, T.V.Byzova, J.Qin. Structural Basis of Paxillin Recruitment By Kindlin-2 in Regulating Cell Adhesion. Structure V. 27 1686 2019.
ISSN: ISSN 0969-2126
PubMed: 31590942
DOI: 10.1016/J.STR.2019.09.006
Page generated: Wed Dec 16 12:57:03 2020

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