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Zinc in PDB 6u13: Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Antibiotic Moxalactam

Enzymatic activity of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Antibiotic Moxalactam

All present enzymatic activity of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Antibiotic Moxalactam:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Antibiotic Moxalactam, PDB code: 6u13 was solved by Y.Kim, N.Maltseva, M.Endres, A.Joachimiak, Center For Structural Genomicsof Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.83 / 1.52
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 103.918, 103.918, 98.929, 90.00, 90.00, 120.00
R / Rfree (%) 12.8 / 16

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Antibiotic Moxalactam (pdb code 6u13). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Antibiotic Moxalactam, PDB code: 6u13:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6u13

Go back to Zinc Binding Sites List in 6u13
Zinc binding site 1 out of 2 in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Antibiotic Moxalactam


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Antibiotic Moxalactam within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:12.7
occ:1.00
 O A:HOH448 1.9 14.1 1.0
ND1 A:HIS107 2.1 10.2 1.0
NE2 A:HIS181 2.1 10.4 1.0
NE2 A:HIS105 2.2 9.2 1.0
O31 A:MX1301 2.5 16.7 1.0
CD2 A:HIS181 3.0 10.8 1.0
CE1 A:HIS107 3.0 10.8 1.0
CG A:HIS107 3.1 9.2 1.0
CE1 A:HIS181 3.1 11.3 1.0
CD2 A:HIS105 3.1 9.7 1.0
CE1 A:HIS105 3.1 9.6 1.0
CB A:HIS107 3.5 9.9 1.0
O4 A:MX1301 3.5 13.6 1.0
ZN A:ZN303 3.6 13.8 1.0
C1 A:MX1301 3.7 17.6 1.0
N1 A:MX1301 3.8 15.2 1.0
NE2 A:HIS107 4.1 10.6 1.0
O5 A:MX1301 4.1 16.6 1.0
CG A:HIS181 4.2 10.8 1.0
C7 A:MX1301 4.2 14.0 1.0
OD1 A:ASP109 4.2 12.6 1.0
ND1 A:HIS181 4.2 12.0 1.0
CD2 A:HIS107 4.2 10.7 1.0
CD2 A:HIS110 4.2 10.5 1.0
ND1 A:HIS105 4.2 9.6 1.0
CG A:HIS105 4.2 9.2 1.0
C9 A:MX1301 4.4 16.8 1.0
NE2 A:HIS110 4.4 11.1 1.0
C4 A:MX1301 4.4 14.1 1.0
C2 A:MX1301 4.4 16.0 1.0
O32 A:MX1301 4.7 18.6 1.0
C3 A:MX1301 4.7 16.7 1.0
OD2 A:ASP109 4.9 12.6 1.0
CA A:HIS107 4.9 10.4 1.0
CG A:ASP109 5.0 12.2 1.0

Zinc binding site 2 out of 2 in 6u13

Go back to Zinc Binding Sites List in 6u13
Zinc binding site 2 out of 2 in the Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Antibiotic Moxalactam


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Antibiotic Moxalactam within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn303

b:13.8
occ:1.00
 O A:HOH448 2.0 14.1 1.0
NE2 A:HIS246 2.1 11.9 1.0
NE2 A:HIS110 2.1 11.1 1.0
OD2 A:ASP109 2.1 12.6 1.0
O4 A:MX1301 2.3 13.6 1.0
N1 A:MX1301 2.5 15.2 1.0
CE1 A:HIS110 3.0 12.3 1.0
CG A:ASP109 3.0 12.2 1.0
CD2 A:HIS246 3.1 11.4 1.0
CE1 A:HIS246 3.1 11.5 1.0
CD2 A:HIS110 3.1 10.5 1.0
C7 A:MX1301 3.1 14.0 1.0
C4 A:MX1301 3.2 14.1 1.0
OD1 A:ASP109 3.3 12.6 1.0
C3 A:MX1301 3.4 16.7 1.0
ZN A:ZN302 3.6 12.7 1.0
O5 A:MX1301 4.1 16.6 1.0
ND1 A:HIS110 4.1 10.9 1.0
ND1 A:HIS246 4.2 12.6 1.0
CG A:HIS110 4.2 10.5 1.0
CG A:HIS246 4.2 11.1 1.0
O31 A:MX1301 4.2 16.7 1.0
O3 A:MX1301 4.2 14.4 1.0
NE2 A:HIS105 4.3 9.2 1.0
C2 A:MX1301 4.3 16.0 1.0
CE1 A:HIS105 4.3 9.6 1.0
CB A:ASP109 4.4 12.2 1.0
O2 A:MX1301 4.5 19.2 1.0
OG A:SER206 4.5 13.4 1.0
C5 A:MX1301 4.5 15.4 1.0
C1 A:MX1301 4.6 17.6 1.0
NE2 A:HIS181 4.8 10.4 1.0

Reference:

Y.Kim, N.Maltseva, M.Endres, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of the Metallo-Beta-Lactamase L1 From Stenotrophomonas Maltophilia in the Complex with the Hydrolyzed Antibiotic Moxalactam. To Be Published.
Page generated: Tue Oct 29 08:22:37 2024

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