Zinc in PDB 6tyj: Crystal Structure of Zinc-Bound Hemerythrin Hhe Cation Binding Domain- Containing Protein (Soak): RV2633C Homolog From Mycobacterium Kansasii

The structure of Crystal Structure of Zinc-Bound Hemerythrin Hhe Cation Binding Domain- Containing Protein (Soak): RV2633C Homolog From Mycobacterium Kansasii, PDB code: 6tyj was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.23 / 1.60
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	52.230, 52.230, 104.650, 90.00, 90.00, 120.00
R / Rfree (%)	17.8 / 20.8

The binding sites of Zinc atom in the Crystal Structure of Zinc-Bound Hemerythrin Hhe Cation Binding Domain- Containing Protein (Soak): RV2633C Homolog From Mycobacterium Kansasii (pdb code 6tyj). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Zinc-Bound Hemerythrin Hhe Cation Binding Domain- Containing Protein (Soak): RV2633C Homolog From Mycobacterium Kansasii, PDB code: 6tyj:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of Zinc-Bound Hemerythrin Hhe Cation Binding Domain- Containing Protein (Soak): RV2633C Homolog From Mycobacterium Kansasii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Zinc-Bound Hemerythrin Hhe Cation Binding Domain- Containing Protein (Soak): RV2633C Homolog From Mycobacterium Kansasii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn300 b:21.0 occ:0.90 OE2 A:GLU49 1.9 17.3 1.0 NE2 A:HIS11 2.1 23.1 1.0 NE2 A:HIS45 2.1 22.1 1.0 NE2 A:HIS105 2.1 35.3 1.0 OE2 A:GLU109 2.2 38.1 1.0 CD A:GLU49 2.9 26.6 1.0 CE1 A:HIS105 2.9 57.1 1.0 CE1 A:HIS45 3.1 20.0 1.0 CE1 A:HIS11 3.1 23.9 1.0 CD2 A:HIS11 3.1 22.2 1.0 CD2 A:HIS45 3.1 20.5 1.0 CD2 A:HIS105 3.2 34.4 1.0 CD A:GLU109 3.2 38.4 1.0 OE1 A:GLU49 3.3 28.4 1.0 ZN A:ZN301 3.6 62.6 0.5 OE1 A:GLU109 3.6 37.2 1.0 ND1 A:HIS105 4.1 33.9 1.0 CG A:GLU49 4.2 18.9 1.0 ND1 A:HIS45 4.2 20.6 1.0 ND1 A:HIS11 4.2 25.3 1.0 CG A:HIS11 4.2 22.6 1.0 CG A:HIS45 4.2 16.2 1.0 CG A:HIS105 4.3 33.7 1.0 CG A:GLU109 4.6 34.8 1.0 CB A:GLU109 4.8 31.1 1.0 CD2 A:LEU7 4.9 23.3 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of Zinc-Bound Hemerythrin Hhe Cation Binding Domain- Containing Protein (Soak): RV2633C Homolog From Mycobacterium Kansasii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Zinc-Bound Hemerythrin Hhe Cation Binding Domain- Containing Protein (Soak): RV2633C Homolog From Mycobacterium Kansasii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:62.6 occ:0.47 CE1 A:HIS105 1.7 57.1 1.0 OE1 A:GLU49 2.0 28.4 1.0 NE2 A:HIS71 2.2 23.1 1.0 O A:HOH430 2.6 27.6 1.0 ND1 A:HIS105 2.6 33.9 1.0 NE2 A:HIS105 2.7 35.3 1.0 CD2 A:HIS71 2.8 23.2 1.0 CD A:GLU49 2.9 26.6 1.0 OH A:TYR54 3.2 27.4 1.0 OE2 A:GLU49 3.3 17.3 1.0 CE1 A:HIS71 3.4 23.5 1.0 ZN A:ZN300 3.6 21.0 0.9 CG A:HIS105 3.8 33.7 1.0 CE1 A:PHE46 3.8 33.2 1.0 CD2 A:HIS105 3.8 34.4 1.0 OE2 A:GLU109 3.8 38.1 1.0 CD1 A:PHE46 4.0 33.5 1.0 CZ A:TYR54 4.1 26.7 1.0 CG A:HIS71 4.1 20.1 1.0 CG A:GLU49 4.2 18.9 1.0 CE2 A:TYR54 4.2 25.9 1.0 CD A:GLU109 4.3 38.4 1.0 ND1 A:HIS71 4.4 23.4 1.0 CB A:GLU49 4.4 16.3 1.0 O A:HOH432 4.4 32.2 1.0 OE1 A:GLU109 4.5 37.2 1.0 CD2 A:HIS45 4.6 20.5 1.0 CZ A:PHE46 4.6 24.4 1.0 NE2 A:HIS45 4.7 22.1 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of Zinc-Bound Hemerythrin Hhe Cation Binding Domain- Containing Protein (Soak): RV2633C Homolog From Mycobacterium Kansasii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Zinc-Bound Hemerythrin Hhe Cation Binding Domain- Containing Protein (Soak): RV2633C Homolog From Mycobacterium Kansasii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn302 b:16.4 occ:0.58 O A:HOH515 1.9 21.8 0.7 OD2 A:ASP50 2.0 25.1 1.0 O A:HOH495 2.0 30.2 1.0 ND1 A:HIS71 2.2 23.4 1.0 CG A:ASP50 2.6 25.1 1.0 OD1 A:ASP50 2.7 23.8 1.0 CG A:HIS71 3.1 20.1 1.0 CE1 A:HIS71 3.2 23.5 1.0 CB A:HIS71 3.4 17.4 1.0 O A:HOH515 3.4 27.9 0.3 O A:HOH427 3.9 55.5 1.0 CD2 A:HIS68 4.0 28.4 1.0 CB A:ASP50 4.1 20.0 1.0 O A:HOH447 4.1 30.6 1.0 NE2 A:HIS71 4.3 23.1 1.0 CD2 A:HIS71 4.3 23.2 1.0 O A:PHE46 4.5 20.2 1.0 CB A:PHE46 4.6 19.9 1.0 CD2 A:PHE46 4.8 24.6 1.0 CA A:HIS71 4.9 17.6 1.0 NE2 A:HIS68 4.9 25.6 1.0 CG A:PHE46 4.9 24.7 1.0 O A:HIS68 5.0 21.1 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of Zinc-Bound Hemerythrin Hhe Cation Binding Domain- Containing Protein (Soak): RV2633C Homolog From Mycobacterium Kansasii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Zinc-Bound Hemerythrin Hhe Cation Binding Domain- Containing Protein (Soak): RV2633C Homolog From Mycobacterium Kansasii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn303 b:0.9 occ:0.63 O A:HOH518 2.0 80.5 0.2 O A:HOH442 2.5 63.8 1.0 OE2 A:GLU37 2.5 29.5 1.0 O A:HOH508 2.7 61.6 1.0 OE1 A:GLU37 3.0 27.0 1.0 CD A:GLU37 3.1 28.4 1.0 CD2 A:LEU34 3.5 21.1 1.0 O A:HOH518 3.5 53.8 0.8 O A:HOH499 4.1 53.8 1.0 CG A:LEU34 4.4 18.3 1.0 CG A:GLU37 4.6 19.7 1.0 NZ A:LYS20 5.0 62.6 1.0

J.Abendroth, S.L.Delker, G.W.Buchko, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Zinc-Bound Hemerythrin Hhe Cation Binding Domain-Containing Protein (Soak): RV2633C Homolog From Mycobacterium Kansasii To Be Published.