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Zinc in PDB 6t1h: Oxa-51-Like Beta-Lactamase Oxa-66

Protein crystallography data

The structure of Oxa-51-Like Beta-Lactamase Oxa-66, PDB code: 6t1h was solved by Y.Takebayashi, D.Chirgadze, S.Henderson, P.J.Warburton, B.E.Evans, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.77 / 2.10
Space group P 43 2 2
Cell size a, b, c (Å), α, β, γ (°) 87.544, 87.544, 90.124, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 22.4

Zinc Binding Sites:

The binding sites of Zinc atom in the Oxa-51-Like Beta-Lactamase Oxa-66 (pdb code 6t1h). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Oxa-51-Like Beta-Lactamase Oxa-66, PDB code: 6t1h:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6t1h

Go back to Zinc Binding Sites List in 6t1h
Zinc binding site 1 out of 2 in the Oxa-51-Like Beta-Lactamase Oxa-66


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Oxa-51-Like Beta-Lactamase Oxa-66 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:27.6
occ:1.00
O A:HOH593 2.1 11.0 1.0
ND1 A:HIS93 2.2 20.6 1.0
O A:HOH588 2.4 26.9 1.0
CG A:HIS93 3.1 18.7 1.0
CE1 A:HIS93 3.3 24.1 1.0
CB A:HIS93 3.3 17.6 1.0
CA A:HIS93 3.8 22.0 1.0
CD2 A:HIS93 4.3 20.0 1.0
NE2 A:HIS93 4.4 23.1 1.0
O A:HIS93 4.4 18.9 1.0
C A:HIS93 4.6 17.7 1.0
N A:HIS93 4.9 19.8 1.0

Zinc binding site 2 out of 2 in 6t1h

Go back to Zinc Binding Sites List in 6t1h
Zinc binding site 2 out of 2 in the Oxa-51-Like Beta-Lactamase Oxa-66


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Oxa-51-Like Beta-Lactamase Oxa-66 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn302

b:42.2
occ:1.00
NE2 A:HIS49 2.1 35.4 1.0
O A:HOH536 2.2 41.1 1.0
CE1 A:HIS49 3.1 33.8 1.0
CD2 A:HIS49 3.1 30.7 1.0
O A:GLU47 4.0 32.5 1.0
ND1 A:HIS49 4.2 33.5 1.0
CG A:HIS49 4.2 32.8 1.0
C A:GLU47 5.0 31.1 1.0

Reference:

Y.Takebayashi, D.Chirgadze, S.Henderson, P.Warburton, P.J.Warburton, B.E.Evans. Structure of the Oxa-51-Like Beta-Lactamase Oxa-66 To Be Published.
Page generated: Tue Oct 29 07:47:21 2024

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