Zinc in PDB 6ryr: Nucleosome-CHD4 Complex Structure (Single CHD4 Copy)

Enzymatic activity of Nucleosome-CHD4 Complex Structure (Single CHD4 Copy)

All present enzymatic activity of Nucleosome-CHD4 Complex Structure (Single CHD4 Copy):
3.6.4.12;

Other elements in 6ryr:

The structure of Nucleosome-CHD4 Complex Structure (Single CHD4 Copy) also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Nucleosome-CHD4 Complex Structure (Single CHD4 Copy) (pdb code 6ryr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Nucleosome-CHD4 Complex Structure (Single CHD4 Copy), PDB code: 6ryr:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6ryr

Go back to Zinc Binding Sites List in 6ryr
Zinc binding site 1 out of 2 in the Nucleosome-CHD4 Complex Structure (Single CHD4 Copy)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Nucleosome-CHD4 Complex Structure (Single CHD4 Copy) within 5.0Å range:
probe atom residue distance (Å) B Occ
W:Zn2003

b:0.1
occ:1.00
SG W:CYS455 2.4 0.2 1.0
SG W:CYS475 2.4 0.5 1.0
SG W:CYS452 2.5 0.9 1.0
CB W:HIS472 2.5 0.2 1.0
CB W:CYS452 3.1 0.9 1.0
CG W:HIS472 3.5 0.2 1.0
CB W:CYS475 3.5 0.5 1.0
ND1 W:HIS472 3.6 0.2 1.0
N W:HIS472 3.7 0.2 1.0
CA W:HIS472 3.7 0.2 1.0
CB W:CYS455 3.9 0.2 1.0
N W:CYS455 4.4 0.2 1.0
CE1 W:HIS474 4.4 0.9 1.0
C W:HIS472 4.5 0.2 1.0
O W:HIS472 4.6 0.2 1.0
CA W:CYS452 4.6 0.9 1.0
NE2 W:HIS474 4.7 0.9 1.0
CA W:CYS455 4.7 0.2 1.0
CD2 W:HIS472 4.8 0.2 1.0
C W:TYR471 4.8 0.2 1.0
CA W:CYS475 4.9 0.5 1.0
CE1 W:HIS472 4.9 0.2 1.0
ND1 W:HIS474 4.9 0.9 1.0
CB W:VAL454 5.0 0.1 1.0

Zinc binding site 2 out of 2 in 6ryr

Go back to Zinc Binding Sites List in 6ryr
Zinc binding site 2 out of 2 in the Nucleosome-CHD4 Complex Structure (Single CHD4 Copy)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Nucleosome-CHD4 Complex Structure (Single CHD4 Copy) within 5.0Å range:
probe atom residue distance (Å) B Occ
W:Zn2004

b:0.5
occ:1.00
SG W:CYS467 2.3 0.8 1.0
SG W:CYS493 2.3 0.3 1.0
SG W:CYS490 2.3 0.6 1.0
SG W:CYS464 2.3 0.7 1.0
CB W:CYS464 2.7 0.7 1.0
CB W:CYS490 3.0 0.6 1.0
OG W:SER469 3.0 0.5 1.0
CB W:SER469 3.2 0.5 1.0
CB W:CYS467 3.6 0.8 1.0
N W:CYS490 3.6 0.6 1.0
CA W:CYS490 3.9 0.6 1.0
CB W:CYS493 3.9 0.3 1.0
O W:CYS467 4.2 0.8 1.0
N W:CYS467 4.2 0.8 1.0
CA W:CYS464 4.2 0.7 1.0
N W:SER469 4.3 0.5 1.0
CA W:CYS467 4.3 0.8 1.0
CA W:SER469 4.4 0.5 1.0
N W:CYS493 4.4 0.3 1.0
C W:CYS467 4.4 0.8 1.0
OG1 W:THR466 4.5 0.2 1.0
C W:CYS490 4.6 0.6 1.0
O W:CYS490 4.7 0.6 1.0
CA W:CYS493 4.7 0.3 1.0
C W:LEU489 4.8 0.0 1.0
C W:THR466 4.9 0.2 1.0
C W:CYS464 5.0 0.7 1.0

Reference:

L.Farnung, M.Ochmann, P.Cramer. Nucleosome-CHD4 Chromatin Remodeller Structure Maps Human Disease Mutations. Elife V. 9 2020.
ISSN: ESSN 2050-084X
PubMed: 32543371
DOI: 10.7554/ELIFE.56178
Page generated: Wed Dec 16 12:43:50 2020

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