Zinc in PDB 6rfr: Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution

All present enzymatic activity of Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution:
1.6.5.3; 1.6.99.3; 7.1.1.2;

The structure of Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution also contains other interesting chemical elements:

Iron

(Fe)

28 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution (pdb code 6rfr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution, PDB code: 6rfr:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ M:Zn201 b:31.4 occ:1.00 NE2 M:HIS110 2.0 8.5 1.0 SG M:CYS97 2.3 13.0 1.0 SG M:CYS128 2.3 9.8 1.0 SG M:CYS125 2.3 10.9 1.0 CE1 M:HIS110 2.6 8.5 1.0 CD2 M:HIS110 3.2 8.5 1.0 CB M:CYS125 3.4 10.9 1.0 CB M:CYS128 3.4 9.8 1.0 CB M:CYS97 3.6 13.0 1.0 ND1 M:HIS110 3.8 8.5 1.0 N M:CYS128 3.9 9.8 1.0 CG M:HIS110 4.1 8.5 1.0 CA M:CYS128 4.3 9.8 1.0 N M:GLY99 4.4 14.4 1.0 CB M:TYR127 4.5 6.6 1.0 OG1 M:THR130 4.6 12.1 1.0 C M:ASP98 4.6 15.4 1.0 CA M:GLY99 4.7 14.4 1.0 C M:CYS97 4.7 13.0 1.0 CA M:CYS97 4.8 13.0 1.0 CA M:CYS125 4.8 10.9 1.0 N M:ASP98 4.8 15.4 1.0 C M:TYR127 4.8 6.6 1.0 O M:ASP98 4.9 15.4 1.0

K.Parey, O.Haapanen, V.Sharma, H.Kofeler, T.Zullig, S.Prinz, K.Siegmund, I.Wittig, D.J.Mills, J.Vonck, W.Kuhlbrandt, V.Zickermann. High-Resolution Cryo-Em Structures of Respiratory Complex I: Mechanism, Assembly, and Disease. Sci Adv V. 5 X9484 2019.
ISSN: ESSN 2375-2548
PubMed: 31844670
DOI: 10.1126/SCIADV.AAX9484