Zinc in PDB 6rfr: Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution

Enzymatic activity of Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution

All present enzymatic activity of Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution:
1.6.5.3; 1.6.99.3; 7.1.1.2;

Other elements in 6rfr:

The structure of Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution also contains other interesting chemical elements:

Iron (Fe) 28 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution (pdb code 6rfr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution, PDB code: 6rfr:

Zinc binding site 1 out of 1 in 6rfr

Go back to Zinc Binding Sites List in 6rfr
Zinc binding site 1 out of 1 in the Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Respiratory Complex I From Yarrowia Lipolytica at 3.2 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Zn201

b:31.4
occ:1.00
NE2 M:HIS110 2.0 8.5 1.0
SG M:CYS97 2.3 13.0 1.0
SG M:CYS128 2.3 9.8 1.0
SG M:CYS125 2.3 10.9 1.0
CE1 M:HIS110 2.6 8.5 1.0
CD2 M:HIS110 3.2 8.5 1.0
CB M:CYS125 3.4 10.9 1.0
CB M:CYS128 3.4 9.8 1.0
CB M:CYS97 3.6 13.0 1.0
ND1 M:HIS110 3.8 8.5 1.0
N M:CYS128 3.9 9.8 1.0
CG M:HIS110 4.1 8.5 1.0
CA M:CYS128 4.3 9.8 1.0
N M:GLY99 4.4 14.4 1.0
CB M:TYR127 4.5 6.6 1.0
OG1 M:THR130 4.6 12.1 1.0
C M:ASP98 4.6 15.4 1.0
CA M:GLY99 4.7 14.4 1.0
C M:CYS97 4.7 13.0 1.0
CA M:CYS97 4.8 13.0 1.0
CA M:CYS125 4.8 10.9 1.0
N M:ASP98 4.8 15.4 1.0
C M:TYR127 4.8 6.6 1.0
O M:ASP98 4.9 15.4 1.0

Reference:

K.Parey, O.Haapanen, V.Sharma, H.Kofeler, T.Zullig, S.Prinz, K.Siegmund, I.Wittig, D.J.Mills, J.Vonck, W.Kuhlbrandt, V.Zickermann. High-Resolution Cryo-Em Structures of Respiratory Complex I: Mechanism, Assembly, and Disease. Sci Adv V. 5 X9484 2019.
ISSN: ESSN 2375-2548
PubMed: 31844670
DOI: 10.1126/SCIADV.AAX9484
Page generated: Wed Dec 16 12:40:04 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy