Zinc in PDB 6r7w: Tannerella Forsythia Mature Mirolysin in Complex with A Cleaved Peptide.

Protein crystallography data

The structure of Tannerella Forsythia Mature Mirolysin in Complex with A Cleaved Peptide., PDB code: 6r7w was solved by A.Rodriguez-Banqueri, T.Guevara, M.Ksiazek, J.Potempa, F.X.Gomis-Ruth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.70 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 40.610, 66.490, 96.220, 90.00, 90.00, 90.00
R / Rfree (%) 14.4 / 15.8

Other elements in 6r7w:

The structure of Tannerella Forsythia Mature Mirolysin in Complex with A Cleaved Peptide. also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Tannerella Forsythia Mature Mirolysin in Complex with A Cleaved Peptide. (pdb code 6r7w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Tannerella Forsythia Mature Mirolysin in Complex with A Cleaved Peptide., PDB code: 6r7w:

Zinc binding site 1 out of 1 in 6r7w

Go back to Zinc Binding Sites List in 6r7w
Zinc binding site 1 out of 1 in the Tannerella Forsythia Mature Mirolysin in Complex with A Cleaved Peptide.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Tannerella Forsythia Mature Mirolysin in Complex with A Cleaved Peptide. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:8.9
occ:0.93
O5 A:CIT406 1.9 11.0 1.0
NE2 A:HIS228 2.0 8.6 1.0
NE2 A:HIS224 2.0 8.0 1.0
NE2 A:HIS234 2.0 9.4 1.0
C6 A:CIT406 2.6 11.8 1.0
O6 A:CIT406 2.6 11.6 1.0
CE1 A:HIS228 3.0 8.4 1.0
CD2 A:HIS224 3.0 8.7 1.0
CE1 A:HIS234 3.0 9.8 1.0
CD2 A:HIS234 3.0 8.9 1.0
CE1 A:HIS224 3.0 8.6 1.0
CD2 A:HIS228 3.1 9.3 1.0
O1 A:CIT406 3.9 14.3 1.0
CE1 A:TYR286 3.9 9.6 1.0
C3 A:CIT406 4.1 11.0 1.0
CG A:HIS234 4.1 8.6 1.0
ND1 A:HIS234 4.1 9.9 1.0
ND1 A:HIS228 4.1 9.7 1.0
CG A:HIS224 4.1 8.1 1.0
CG A:HIS228 4.2 9.3 1.0
ND1 A:HIS224 4.2 8.1 1.0
CA B:LYS1 4.3 9.4 1.0
N B:LYS1 4.3 9.6 1.0
OH A:TYR286 4.4 12.2 1.0
OE2 A:GLU225 4.4 13.7 1.0
O A:HOH520 4.6 20.1 1.0
O7 A:CIT406 4.6 13.6 1.0
C1 A:CIT406 4.6 13.2 1.0
CZ A:TYR286 4.6 11.9 1.0
CB B:LYS1 4.8 9.6 1.0
CE A:MET284 4.8 9.1 1.0
C2 A:CIT406 4.9 12.4 1.0
CD1 A:TYR286 4.9 10.3 1.0
C4 A:CIT406 4.9 11.8 1.0

Reference:

T.Guevara, A.Rodriguez-Banqueri, M.Ksiazek, J.Potempa, F.X.Gomis-Ruth. Structure-Based Mechanism of Cysteine-Switch Latency and of Catalysis By Pappalysin-Family Metallopeptidases. Iucrj 2019.
ISSN: ESSN 2052-2525
Page generated: Wed Dec 16 12:36:45 2020

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