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Zinc in PDB 6r7i: Structural Basis of Cullin-2 Ring E3 Ligase Regulation By the COP9 Signalosome

Zinc Binding Sites:

The binding sites of Zinc atom in the Structural Basis of Cullin-2 Ring E3 Ligase Regulation By the COP9 Signalosome (pdb code 6r7i). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Structural Basis of Cullin-2 Ring E3 Ligase Regulation By the COP9 Signalosome, PDB code: 6r7i:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 6r7i

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Zinc binding site 1 out of 4 in the Structural Basis of Cullin-2 Ring E3 Ligase Regulation By the COP9 Signalosome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structural Basis of Cullin-2 Ring E3 Ligase Regulation By the COP9 Signalosome within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn401

b:0.3
occ:1.00
 O E:ARG106 2.0 0.2 1.0
OG1 E:THR154 2.0 0.0 1.0
O E:ILE150 2.2 0.2 1.0
OD1 E:ASP151 2.2 0.1 1.0
CA E:ASP151 2.3 0.3 1.0
C E:ILE150 2.3 0.5 1.0
N E:ASP151 2.3 0.6 1.0
CG E:ASP151 2.9 0.4 1.0
CB E:ASP151 3.1 0.2 1.0
C E:ARG106 3.2 0.8 1.0
CB E:THR154 3.2 0.3 1.0
CG2 E:ILE150 3.3 0.2 1.0
N E:ASN108 3.3 0.1 1.0
C E:ASP151 3.5 0.7 1.0
CA E:ILE150 3.6 0.8 1.0
CB E:ILE150 3.7 0.9 1.0
N E:THR154 3.8 0.6 1.0
CA E:VAL107 3.9 0.3 1.0
OD2 E:ASP151 3.9 0.8 1.0
N E:VAL107 3.9 0.4 1.0
CD N:LYS122 4.0 69.1 1.0
CA E:THR154 4.1 0.2 1.0
C E:VAL107 4.1 0.2 1.0
O E:ASP151 4.2 0.9 1.0
N E:ARG106 4.2 0.1 1.0
CA E:ASN108 4.2 0.4 1.0
CG2 E:THR154 4.2 0.1 1.0
CA E:ARG106 4.3 0.9 1.0
N E:VAL152 4.3 0.6 1.0
N E:ALA109 4.5 0.5 1.0
N E:ILE150 4.6 0.8 1.0
NZ N:LYS122 4.6 71.3 1.0
C E:THR105 4.7 0.7 1.0
CE N:LYS122 4.9 70.3 1.0
C E:ASN108 4.9 0.9 1.0
C E:SER153 5.0 0.0 1.0
CB E:ARG106 5.0 0.5 1.0
CG N:LYS122 5.0 67.4 1.0

Zinc binding site 2 out of 4 in 6r7i

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Zinc binding site 2 out of 4 in the Structural Basis of Cullin-2 Ring E3 Ligase Regulation By the COP9 Signalosome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structural Basis of Cullin-2 Ring E3 Ligase Regulation By the COP9 Signalosome within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Zn201

b:0.4
occ:1.00
 OD2 R:ASP51 1.9 0.9 1.0
CA R:CYS53 2.3 0.1 1.0
CB R:ASN47 2.3 0.7 1.0
CG R:ASN47 2.4 0.3 1.0
ND2 R:ASN47 2.5 0.6 1.0
C R:CYS53 2.8 0.2 1.0
O R:LEU52 2.8 0.0 1.0
N R:ILE54 3.0 0.0 1.0
CG R:ASP51 3.1 0.2 1.0
OD1 R:ASN47 3.1 0.3 1.0
N R:CYS53 3.2 0.1 1.0
C R:LEU52 3.3 0.7 1.0
CB R:CYS53 3.4 0.8 1.0
OD1 R:ASP51 3.6 0.9 1.0
CA R:ASN47 3.6 0.3 1.0
O R:CYS53 3.7 0.4 1.0
CA R:ILE54 4.2 0.3 1.0
CB R:ASP51 4.3 0.9 1.0
C R:ASN47 4.3 0.8 1.0
CG1 R:ILE54 4.4 0.5 1.0
O R:ASN47 4.7 0.0 1.0
CA R:LEU52 4.7 0.3 1.0
N R:ASN47 4.8 0.5 1.0
CB R:ILE54 4.9 0.1 1.0
SG R:CYS53 4.9 0.4 1.0
N R:HIS48 4.9 0.1 1.0
N R:LEU52 4.9 0.4 1.0
C R:ASP51 5.0 0.7 1.0

Zinc binding site 3 out of 4 in 6r7i

Go back to Zinc Binding Sites List in 6r7i
Zinc binding site 3 out of 4 in the Structural Basis of Cullin-2 Ring E3 Ligase Regulation By the COP9 Signalosome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structural Basis of Cullin-2 Ring E3 Ligase Regulation By the COP9 Signalosome within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Zn202

b:0.9
occ:1.00
 O R:THR69 2.0 0.6 1.0
O R:ALA78 2.1 0.3 1.0
CD1 R:ILE49 2.3 0.8 1.0
CB R:THR69 2.4 0.2 1.0
C R:THR69 2.7 0.9 1.0
CA R:THR69 2.8 0.1 1.0
C R:ALA78 2.9 0.1 1.0
N R:THR69 3.2 0.8 1.0
CG2 R:THR69 3.2 0.9 1.0
CG1 R:ILE49 3.2 0.0 1.0
CB R:CYS42 3.2 0.0 1.0
OG1 R:THR69 3.5 0.5 1.0
CB R:ALA78 3.5 0.3 1.0
N R:PHE79 3.7 1.0 1.0
CD2 R:HIS80 3.7 0.3 1.0
CA R:ALA78 3.8 0.8 1.0
N R:VAL70 4.0 0.6 1.0
CA R:PHE79 4.1 0.7 1.0
NE2 R:HIS80 4.1 0.5 1.0
SG R:CYS42 4.1 0.6 1.0
CA R:CYS42 4.2 0.8 1.0
C R:CYS68 4.2 0.3 1.0
C R:PHE79 4.4 0.3 1.0
N R:CYS42 4.4 0.2 1.0
CB R:ILE49 4.4 0.7 1.0
N R:HIS80 4.4 0.1 1.0
CA R:VAL70 4.7 0.8 1.0
O R:CYS68 4.8 0.5 1.0
CG R:HIS80 4.8 0.4 1.0
CG2 R:VAL70 4.8 0.2 1.0
N R:ALA78 4.9 0.3 1.0

Zinc binding site 4 out of 4 in 6r7i

Go back to Zinc Binding Sites List in 6r7i
Zinc binding site 4 out of 4 in the Structural Basis of Cullin-2 Ring E3 Ligase Regulation By the COP9 Signalosome


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structural Basis of Cullin-2 Ring E3 Ligase Regulation By the COP9 Signalosome within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Zn203

b:0.4
occ:1.00
 ND1 R:HIS82 2.1 1.0 1.0
CG R:HIS82 2.7 0.6 1.0
CB R:HIS82 3.0 1.0 1.0
CE1 R:HIS82 3.0 0.2 1.0
N R:HIS82 3.6 0.3 1.0
CD2 R:HIS82 3.7 0.8 1.0
NE2 R:HIS82 3.8 0.7 1.0
CA R:HIS82 3.9 0.9 1.0
ND2 R:ASN59 4.1 0.8 1.0
CB R:PHE81 4.3 0.5 1.0
C R:PHE81 4.3 0.8 1.0
O R:PHE81 4.9 0.9 1.0
CA R:PHE81 5.0 0.6 1.0
CG R:ASN59 5.0 0.0 1.0

Reference:

S.V.Faull, A.M.C.Lau, C.Martens, Z.Ahdash, K.Hansen, H.Yebenes, C.Schmidt, F.Beuron, N.B.Cronin, E.P.Morris, A.Politis. Structural Basis of Cullin 2 Ring E3 Ligase Regulation By the COP9 Signalosome. Nat Commun V. 10 3814 2019.
ISSN: ESSN 2041-1723
PubMed: 31444342
DOI: 10.1038/S41467-019-11772-Y
Page generated: Tue Oct 29 06:06:03 2024

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