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Zinc in PDB 6r1g: Crystal Structure of Borrelia Burgdorferi Periplasmic Protein BB0365 (IPLA7, P22)

Protein crystallography data

The structure of Crystal Structure of Borrelia Burgdorferi Periplasmic Protein BB0365 (IPLA7, P22), PDB code: 6r1g was solved by K.Brangulis, I.Akopjana, I.Petrovskis, A.Kazaks, K.Tars, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.22 / 1.55
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 50.650, 63.470, 61.210, 90.00, 111.34, 90.00
R / Rfree (%) 17.5 / 19.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Borrelia Burgdorferi Periplasmic Protein BB0365 (IPLA7, P22) (pdb code 6r1g). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Borrelia Burgdorferi Periplasmic Protein BB0365 (IPLA7, P22), PDB code: 6r1g:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6r1g

Go back to Zinc Binding Sites List in 6r1g
Zinc binding site 1 out of 2 in the Crystal Structure of Borrelia Burgdorferi Periplasmic Protein BB0365 (IPLA7, P22)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Borrelia Burgdorferi Periplasmic Protein BB0365 (IPLA7, P22) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:13.6
occ:1.00
NE2 A:HIS51 2.0 14.7 1.0
ND1 A:HIS140 2.0 14.2 1.0
NE2 A:HIS55 2.0 12.0 1.0
O B:ASN194 2.0 13.5 1.0
C B:ASN194 2.7 13.8 1.0
OXT B:ASN194 2.8 14.1 1.0
CE1 A:HIS140 2.9 13.3 1.0
CE1 A:HIS51 3.0 16.3 1.0
CD2 A:HIS51 3.0 16.9 1.0
CE1 A:HIS55 3.0 10.6 1.0
CD2 A:HIS55 3.0 12.7 1.0
CG A:HIS140 3.1 13.5 1.0
CB A:HIS140 3.5 12.5 1.0
CA A:HIS140 4.0 12.7 1.0
ND1 A:HIS51 4.1 17.4 1.0
CG A:HIS51 4.1 16.2 1.0
NE2 A:HIS140 4.1 16.1 1.0
ND1 A:HIS55 4.1 10.2 1.0
CA B:ASN194 4.1 13.2 1.0
CG A:HIS55 4.2 11.2 1.0
CD2 A:HIS140 4.2 14.2 1.0
O A:HOH372 4.2 20.9 1.0
O B:HOH334 4.6 18.9 1.0
CB B:ASN194 4.6 13.2 1.0
O A:HOH375 4.7 28.3 1.0
CG B:ASN194 4.7 12.9 1.0
O B:THR193 4.7 14.1 1.0
O A:LEU139 4.7 11.9 1.0
O5 B:PG4204 4.7 38.4 1.0
ND2 B:ASN194 4.9 13.1 1.0
N A:HIS140 5.0 12.8 1.0
O B:HOH336 5.0 15.5 1.0

Zinc binding site 2 out of 2 in 6r1g

Go back to Zinc Binding Sites List in 6r1g
Zinc binding site 2 out of 2 in the Crystal Structure of Borrelia Burgdorferi Periplasmic Protein BB0365 (IPLA7, P22)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Borrelia Burgdorferi Periplasmic Protein BB0365 (IPLA7, P22) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:13.4
occ:1.00
NE2 B:HIS51 1.9 14.3 1.0
ND1 B:HIS140 2.0 15.0 1.0
NE2 B:HIS55 2.0 12.2 1.0
CE1 B:HIS51 2.9 16.4 1.0
CE1 B:HIS140 2.9 15.6 1.0
CD2 B:HIS51 3.0 15.4 1.0
CE1 B:HIS55 3.0 10.9 1.0
CD2 B:HIS55 3.1 11.7 1.0
CG B:HIS140 3.1 14.2 1.0
CB B:HIS140 3.5 13.3 1.0
CA B:HIS140 4.0 12.0 1.0
ND1 B:HIS51 4.1 16.2 1.0
CG B:HIS51 4.1 14.8 1.0
NE2 B:HIS140 4.1 15.9 1.0
ND1 B:HIS55 4.2 10.5 1.0
CD2 B:HIS140 4.2 14.1 1.0
CG B:HIS55 4.2 11.2 1.0
O B:HOH369 4.3 20.7 1.0
O B:HOH383 4.7 25.4 1.0
O B:LEU139 4.7 11.9 1.0
O1 B:PG4205 4.8 41.5 1.0
C1 B:PG4205 4.9 33.8 1.0
N B:HIS140 5.0 12.5 1.0

Reference:

K.Brangulis, I.Akopjana, I.Petrovskis, A.Kazaks, A.Jekabsons, K.Jaudzems, A.Viksna, M.Bertins, K.Tars. Structural Analysis of Borrelia Burgdorferi Periplasmic Lipoprotein BB0365 Involved in Lyme Disease Infection. Febs Lett. 2019.
ISSN: ISSN 0014-5793
PubMed: 31486526
DOI: 10.1002/1873-3468.13594
Page generated: Wed Dec 16 12:35:31 2020

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