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Zinc in PDB 6qpk: Zt-KP6-1: An Effector From Zymoseptoria Tritici

Protein crystallography data

The structure of Zt-KP6-1: An Effector From Zymoseptoria Tritici, PDB code: 6qpk was solved by A.Padilla, F.Hoh, K.De Guillen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.45 / 1.36
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.395, 57.294, 79.355, 90.00, 90.00, 90.00
R / Rfree (%) 14 / 18.3

Zinc Binding Sites:

The binding sites of Zinc atom in the Zt-KP6-1: An Effector From Zymoseptoria Tritici (pdb code 6qpk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Zt-KP6-1: An Effector From Zymoseptoria Tritici, PDB code: 6qpk:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6qpk

Go back to Zinc Binding Sites List in 6qpk
Zinc binding site 1 out of 2 in the Zt-KP6-1: An Effector From Zymoseptoria Tritici


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Zt-KP6-1: An Effector From Zymoseptoria Tritici within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn101

b:18.7
occ:1.00
N A:TRS103 2.0 16.5 1.0
O7 A:CIT104 2.0 17.6 1.0
O5 A:CIT104 2.0 20.4 1.0
O3 A:CIT104 2.1 21.2 1.0
O3 A:TRS103 2.1 13.9 1.0
C6 A:CIT104 2.8 18.9 1.0
C3 A:CIT104 2.8 17.8 1.0
C3 A:TRS103 2.8 16.1 1.0
C A:TRS103 3.0 16.9 1.0
C5 A:CIT104 3.0 22.8 1.0
C4 A:CIT104 3.3 18.4 1.0
C2 A:TRS103 3.6 17.8 1.0
O1 A:CIT104 3.9 20.8 1.0
O6 A:CIT104 4.0 24.9 1.0
O A:TYR74 4.1 14.9 1.0
O A:HOH226 4.2 52.1 1.0
C2 A:CIT104 4.2 21.5 1.0
O2 A:TRS103 4.2 22.2 1.0
O4 A:CIT104 4.2 26.4 1.0
C1 A:TRS103 4.2 20.6 1.0
O1 A:TRS103 4.4 24.4 1.0
C1 A:CIT104 4.6 22.6 1.0
C A:TYR74 4.8 14.4 1.0
CD1 A:TYR74 4.8 13.8 1.0
CA A:TYR74 4.8 14.0 1.0

Zinc binding site 2 out of 2 in 6qpk

Go back to Zinc Binding Sites List in 6qpk
Zinc binding site 2 out of 2 in the Zt-KP6-1: An Effector From Zymoseptoria Tritici


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Zt-KP6-1: An Effector From Zymoseptoria Tritici within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn101

b:17.9
occ:1.00
O6 B:CIT103 2.0 17.3 1.0
N B:TRS102 2.0 13.4 1.0
O7 B:CIT103 2.1 16.0 1.0
O4 B:CIT103 2.1 18.1 1.0
O1 B:TRS102 2.1 12.1 1.0
C6 B:CIT103 2.7 19.8 1.0
C3 B:CIT103 2.8 18.5 1.0
C1 B:TRS102 2.9 13.4 1.0
C B:TRS102 3.0 14.6 1.0
C5 B:CIT103 3.1 17.6 1.0
C4 B:CIT103 3.4 19.8 1.0
C3 B:TRS102 3.7 16.9 1.0
O2 B:CIT103 4.0 20.2 1.0
O5 B:CIT103 4.0 24.2 1.0
O B:TYR74 4.1 14.7 1.0
O3 B:CIT103 4.2 24.6 1.0
O3 B:TRS102 4.2 20.1 1.0
C2 B:CIT103 4.2 19.8 1.0
C2 B:TRS102 4.2 15.4 1.0
O2 B:TRS102 4.4 18.6 1.0
C1 B:CIT103 4.6 20.6 1.0
C B:TYR74 4.8 12.8 1.0
CA B:TYR74 4.8 13.2 1.0
CD1 B:TYR74 4.9 13.8 1.0

Reference:

A.Padilla, F.Hoh, K.De Guillen. Structure of Ztmax: An Effector From Zymoseptoria To Be Published.
Page generated: Tue Oct 29 05:44:25 2024

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