Atomistry » Zinc » PDB 6pv2-6qcn » 6qa0
Atomistry »
  Zinc »
    PDB 6pv2-6qcn »
      6qa0 »

Zinc in PDB 6qa0: MSRB3 - Aa 1-137

Enzymatic activity of MSRB3 - Aa 1-137

All present enzymatic activity of MSRB3 - Aa 1-137:
1.8.4.12; 1.8.4.14;

Protein crystallography data

The structure of MSRB3 - Aa 1-137, PDB code: 6qa0 was solved by G.Javitt, D.Fass, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.65 / 1.71
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 81.149, 85.713, 49.167, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 22.2

Other elements in 6qa0:

The structure of MSRB3 - Aa 1-137 also contains other interesting chemical elements:

Arsenic (As) 2 atoms
Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the MSRB3 - Aa 1-137 (pdb code 6qa0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the MSRB3 - Aa 1-137, PDB code: 6qa0:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6qa0

Go back to Zinc Binding Sites List in 6qa0
Zinc binding site 1 out of 2 in the MSRB3 - Aa 1-137


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of MSRB3 - Aa 1-137 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn203

b:21.4
occ:1.00
SG A:CYS57 2.3 22.5 1.0
SG A:CYS106 2.3 20.4 1.0
SG A:CYS103 2.4 22.3 1.0
SG A:CYS54 2.4 20.2 1.0
CB A:CYS103 3.2 18.7 1.0
CB A:CYS54 3.2 21.9 1.0
CB A:CYS57 3.3 26.6 1.0
CB A:CYS106 3.4 26.1 1.0
N A:CYS106 3.8 21.3 1.0
N A:CYS57 3.8 22.7 1.0
CA A:CYS57 4.1 21.9 1.0
CA A:CYS106 4.2 20.9 1.0
CB A:ALA108 4.5 17.5 1.0
CB A:GLN105 4.6 25.2 1.0
CB A:VAL56 4.6 18.6 1.0
CA A:CYS103 4.7 18.9 1.0
CA A:CYS54 4.7 19.1 1.0
C A:GLN105 4.8 26.3 1.0
C A:CYS106 4.8 20.6 1.0
OG1 A:THR59 4.8 32.7 1.0
C A:CYS57 4.9 22.3 1.0
C A:VAL56 4.9 24.0 1.0
N A:ALA108 4.9 21.3 1.0
N A:GLY107 5.0 21.8 1.0
N A:GLY58 5.0 22.1 1.0

Zinc binding site 2 out of 2 in 6qa0

Go back to Zinc Binding Sites List in 6qa0
Zinc binding site 2 out of 2 in the MSRB3 - Aa 1-137


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of MSRB3 - Aa 1-137 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:20.8
occ:1.00
SG B:CYS106 2.3 19.4 1.0
SG B:CYS57 2.4 21.0 1.0
SG B:CYS103 2.4 21.4 1.0
SG B:CYS54 2.4 19.4 1.0
CB B:CYS54 3.2 19.7 1.0
CB B:CYS103 3.2 20.2 1.0
CB B:CYS57 3.3 19.3 1.0
CB B:CYS106 3.4 18.2 1.0
N B:CYS57 3.8 18.0 1.0
N B:CYS106 3.9 21.1 1.0
CA B:CYS57 4.1 19.9 1.0
CA B:CYS106 4.2 17.9 1.0
CB B:ALA108 4.5 18.6 1.0
CB B:VAL56 4.6 19.6 1.0
CA B:CYS103 4.7 22.2 1.0
CA B:CYS54 4.7 18.3 1.0
C B:CYS106 4.8 19.2 1.0
C B:CYS57 4.8 21.9 1.0
CB B:GLN105 4.8 21.4 1.0
C B:VAL56 4.8 20.6 1.0
C B:GLN105 4.9 23.5 1.0
N B:GLY107 4.9 19.2 1.0
OG1 B:THR59 4.9 23.3 1.0
N B:ALA108 4.9 18.8 1.0
N B:GLY58 5.0 23.4 1.0
CB B:THR59 5.0 22.1 1.0

Reference:

G.Javitt, C.Zhenbo, N.Bulleid, D.Fass. Structure of A Human Endoplasmic Reticulum Methionine Sulfoxide Reductase To Be Published.
Page generated: Tue Oct 29 05:33:09 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy