Zinc in PDB 6pqr: Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc)

The structure of Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc) also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Potassium	(K)	2 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc) (pdb code 6pqr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc), PDB code: 6pqr:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn602 b:0.0 occ:1.00 NE2 A:HIS413 2.0 0.3 1.0 NE2 A:HIS408 2.0 0.0 1.0 NZ A:LYS409 2.2 0.1 1.0 SG A:CYS243 2.3 0.9 1.0 CD2 A:HIS413 2.3 0.3 1.0 SG A:CYS240 2.4 0.7 1.0 CD2 A:HIS408 2.8 0.0 1.0 CB A:CYS243 3.1 0.9 1.0 CE1 A:HIS413 3.2 0.3 1.0 CE1 A:HIS408 3.2 0.0 1.0 CE A:LYS409 3.4 0.1 1.0 CD A:LYS409 3.5 0.1 1.0 CG A:HIS413 3.5 0.3 1.0 N A:CYS243 3.7 0.9 1.0 CB A:CYS240 3.8 0.7 1.0 ND1 A:HIS413 3.9 0.3 1.0 CG A:HIS408 4.0 0.0 1.0 CA A:CYS243 4.0 0.9 1.0 ND1 A:HIS408 4.1 0.0 1.0 CD2 A:LEU242 4.2 0.0 1.0 CB A:LEU242 4.4 0.0 1.0 CB A:HIS413 4.7 0.3 1.0 C A:LEU242 4.7 0.0 1.0 CA A:LEU242 4.9 0.0 1.0 CG A:LYS409 5.0 0.1 1.0 CG A:LEU242 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Hztransib/Intact Tir Substrate Dna Pre-Reaction Complex (Prc) within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn602 b:1.0 occ:1.00 NE2 D:HIS413 2.0 0.8 1.0 NE2 D:HIS408 2.0 0.4 1.0 NZ D:LYS409 2.2 0.4 1.0 SG D:CYS243 2.3 0.7 1.0 CD2 D:HIS413 2.3 0.8 1.0 SG D:CYS240 2.4 0.6 1.0 CD2 D:HIS408 2.8 0.4 1.0 CB D:CYS243 3.1 0.7 1.0 CE1 D:HIS413 3.2 0.8 1.0 CE1 D:HIS408 3.2 0.4 1.0 CE D:LYS409 3.4 0.4 1.0 CD D:LYS409 3.5 0.4 1.0 CG D:HIS413 3.5 0.8 1.0 N D:CYS243 3.7 0.7 1.0 CB D:CYS240 3.8 0.6 1.0 ND1 D:HIS413 3.9 0.8 1.0 CG D:HIS408 4.0 0.4 1.0 CA D:CYS243 4.0 0.7 1.0 ND1 D:HIS408 4.1 0.4 1.0 CD2 D:LEU242 4.2 0.1 1.0 CB D:LEU242 4.4 0.1 1.0 CB D:HIS413 4.7 0.8 1.0 C D:LEU242 4.7 0.1 1.0 CA D:LEU242 4.9 0.1 1.0 CG D:LYS409 5.0 0.4 1.0 CG D:LEU242 5.0 0.1 1.0

C.Liu, Y.Yang, D.G.Schatz. Structures of A Rag-Like Transposase During Cut-and-Paste Transposition. Nature V. 575 540 2019.
ISSN: ESSN 1476-4687
PubMed: 31723264
DOI: 10.1038/S41586-019-1753-7