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Zinc in PDB 6oem: Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0)

Enzymatic activity of Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0)

All present enzymatic activity of Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0):
2.3.2.27;

Other elements in 6oem:

The structure of Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0) (pdb code 6oem). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0), PDB code: 6oem:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6oem

Go back to Zinc Binding Sites List in 6oem
Zinc binding site 1 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1102

b:94.0
occ:1.00
NE2 A:HIS937 2.1 95.6 1.0
SG A:CYS727 2.1 91.7 1.0
NE2 A:HIS942 2.1 96.0 1.0
SG A:CYS730 2.1 90.7 1.0
CD2 A:HIS937 2.2 95.6 1.0
CD2 A:HIS942 2.8 96.0 1.0
CE1 A:HIS942 3.2 96.0 1.0
CB A:CYS727 3.3 91.7 1.0
CE1 A:HIS937 3.4 95.6 1.0
CG A:HIS937 3.6 95.6 1.0
CB A:CYS730 3.8 90.7 1.0
CG A:HIS942 3.9 96.0 1.0
ND1 A:HIS937 4.1 95.6 1.0
ND1 A:HIS942 4.1 96.0 1.0
N A:CYS730 4.2 90.7 1.0
CG2 A:THR732 4.4 88.2 1.0
CA A:CYS727 4.5 91.7 1.0
CA A:CYS730 4.6 90.7 1.0
CB A:HIS937 4.8 95.6 1.0
CG A:LYS938 4.9 96.7 1.0
O A:CYS730 5.0 90.7 1.0

Zinc binding site 2 out of 2 in 6oem

Go back to Zinc Binding Sites List in 6oem
Zinc binding site 2 out of 2 in the Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Mouse RAG1/2 Prc Complex (DNA0) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1102

b:86.1
occ:1.00
NE2 C:HIS937 2.1 91.6 1.0
SG C:CYS727 2.1 82.7 1.0
NE2 C:HIS942 2.1 86.0 1.0
SG C:CYS730 2.1 82.7 1.0
CD2 C:HIS937 2.4 91.6 1.0
CB C:CYS727 2.5 82.7 1.0
CD2 C:HIS942 2.8 86.0 1.0
CE1 C:HIS942 3.2 86.0 1.0
CE1 C:HIS937 3.3 91.6 1.0
CB C:CYS730 3.6 82.7 1.0
CG C:HIS937 3.7 91.6 1.0
CA C:CYS727 3.9 82.7 1.0
CG C:HIS942 4.0 86.0 1.0
ND1 C:HIS937 4.0 91.6 1.0
ND1 C:HIS942 4.2 86.0 1.0
N C:CYS730 4.2 82.7 1.0
CA C:CYS730 4.5 82.7 1.0
C C:CYS727 4.8 82.7 1.0
N C:CYS727 4.8 82.7 1.0
CB C:HIS937 4.9 91.6 1.0
O C:CYS730 4.9 82.7 1.0
CG C:HIS744 5.0 89.9 1.0

Reference:

X.Chen, Y.Cui, Z.H.Zhou, W.Yang, M.Gellert. Cutting Antiparallel Dna Strands in A Single Active Site Nat.Struct.Mol.Biol. 2020.
ISSN: ESSN 1545-9985
Page generated: Wed Dec 16 12:26:06 2020

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