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Zinc in PDB 6mif: LIM5 Domain of PINCH1 Protein

Zinc Binding Sites:

The binding sites of Zinc atom in the LIM5 Domain of PINCH1 Protein (pdb code 6mif). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the LIM5 Domain of PINCH1 Protein, PDB code: 6mif:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6mif

Go back to Zinc Binding Sites List in 6mif
Zinc binding site 1 out of 2 in the LIM5 Domain of PINCH1 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of LIM5 Domain of PINCH1 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.3
occ:1.00
SG A:CYS303 2.3 0.3 1.0
SG A:CYS281 2.3 0.4 1.0
SG A:CYS300 2.3 0.4 1.0
SG A:CYS278 2.3 0.2 1.0
HB2 A:CYS281 2.5 0.3 1.0
HB A:THR280 2.7 0.3 1.0
HB2 A:CYS303 2.8 0.3 1.0
CB A:CYS281 2.9 0.3 1.0
H A:CYS300 3.0 0.2 1.0
CB A:CYS303 3.1 0.3 1.0
HB3 A:CYS300 3.3 0.3 1.0
CB A:CYS300 3.4 0.3 1.0
N A:CYS281 3.5 0.3 1.0
H A:CYS303 3.5 0.2 1.0
C A:THR280 3.6 0.3 1.0
H A:CYS281 3.7 0.3 1.0
HB3 A:CYS281 3.7 0.3 1.0
N A:CYS300 3.7 0.2 1.0
CB A:THR280 3.8 0.3 1.0
CA A:CYS281 3.8 0.3 1.0
CB A:CYS278 3.8 0.2 1.0
HB3 A:CYS303 3.9 0.3 1.0
O A:THR280 3.9 0.4 1.0
HB2 A:CYS278 4.0 0.2 1.0
HB3 A:CYS278 4.0 0.2 1.0
N A:CYS303 4.0 0.2 1.0
HG21 A:VAL299 4.1 1.1 1.0
CA A:CYS303 4.1 0.2 1.0
CA A:CYS300 4.1 0.3 1.0
HG22 A:THR280 4.2 1.0 1.0
HB3 A:LYS302 4.2 0.4 1.0
H A:THR280 4.2 0.2 1.0
CA A:THR280 4.2 0.3 1.0
HA A:CYS281 4.2 0.4 1.0
HB2 A:CYS300 4.3 0.3 1.0
HA A:VAL299 4.4 0.2 1.0
HA A:CYS303 4.4 0.2 1.0
CG2 A:THR280 4.5 0.3 1.0
HG1 A:THR280 4.5 0.9 1.0
O A:CYS300 4.5 0.2 1.0
N A:THR280 4.6 0.3 1.0
OG1 A:THR280 4.7 0.3 1.0
HG23 A:THR280 4.7 1.1 1.0
C A:CYS300 4.7 0.3 1.0
HG22 A:VAL299 4.8 1.0 1.0
C A:VAL299 4.8 0.2 1.0
CG2 A:VAL299 4.9 0.4 1.0
HB A:THR283 5.0 0.2 1.0

Zinc binding site 2 out of 2 in 6mif

Go back to Zinc Binding Sites List in 6mif
Zinc binding site 2 out of 2 in the LIM5 Domain of PINCH1 Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of LIM5 Domain of PINCH1 Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn402

b:0.5
occ:1.00
HB2 A:CYS272 1.9 0.7 1.0
SG A:CYS252 2.3 0.5 1.0
SG A:CYS255 2.3 0.8 1.0
SG A:CYS275 2.3 0.5 1.0
SG A:CYS272 2.3 0.5 1.0
HB3 A:CYS252 2.4 0.4 1.0
CB A:CYS272 2.5 0.4 1.0
CB A:CYS252 2.7 0.3 1.0
HB2 A:CYS252 3.0 0.5 1.0
HB3 A:CYS272 3.1 0.8 1.0
H A:CYS272 3.2 0.3 1.0
HB3 A:CYS255 3.2 1.5 1.0
HB2 A:CYS275 3.3 0.5 1.0
H A:CYS255 3.3 0.4 1.0
CB A:CYS255 3.4 0.8 1.0
HB3 A:HIS254 3.4 1.0 1.0
CB A:CYS275 3.4 0.5 1.0
CA A:CYS272 3.7 0.3 1.0
N A:CYS272 3.7 0.3 1.0
N A:CYS255 3.8 0.5 1.0
HB3 A:CYS275 3.9 0.6 1.0
H A:CYS275 4.0 0.4 1.0
CA A:CYS252 4.1 0.3 1.0
O A:CYS252 4.1 0.3 1.0
HB2 A:CYS255 4.2 1.4 1.0
HA A:CYS272 4.2 0.3 1.0
CA A:CYS255 4.2 0.6 1.0
H A:ARG257 4.3 0.6 1.0
CB A:HIS254 4.4 0.7 1.0
HB2 A:ARG257 4.4 1.8 1.0
HB2 A:HIS254 4.5 1.1 1.0
C A:CYS252 4.5 0.3 1.0
N A:CYS275 4.6 0.4 1.0
H A:HIS254 4.7 0.4 1.0
C A:HIS254 4.7 0.6 1.0
CA A:CYS275 4.7 0.5 1.0
H A:CYS252 4.7 0.3 1.0
HD21 A:ASN274 4.7 0.9 1.0
H A:ASN256 4.7 0.4 1.0
HA A:CYS252 4.7 0.3 1.0
HG2 A:ARG257 4.8 0.9 1.0
C A:CYS272 4.8 0.3 1.0
N A:CYS252 4.9 0.3 1.0
HA A:TRP271 4.9 0.3 1.0
O A:ARG257 4.9 0.4 1.0
HA A:ILE259 4.9 0.4 1.0
C A:TRP271 4.9 0.3 1.0
HB2 A:ASN274 5.0 0.5 1.0
CA A:HIS254 5.0 0.6 1.0

Reference:

J.Qin, J.Vaynberg. LIM5 Domain of PINCH1 Protein To Be Published.
Page generated: Tue Oct 29 03:10:34 2024

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