Zinc in PDB 6lvu: Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima

The structure of Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima, PDB code: 6lvu was solved by Y.Lee, W.C.Lee, Y.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.37 / 2.29
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	23.834, 61.955, 95.724, 90.00, 90.00, 90.00
R / Rfree (%)	22.2 / 28.4

The binding sites of Zinc atom in the Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima (pdb code 6lvu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 9 binding sites of Zinc where determined in the Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima, PDB code: 6lvu:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Zinc binding site 1 out of 9 in the Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:28.7 occ:1.00 OE1 A:GLU53 2.1 22.7 1.0 OE1 B:GLU5 2.2 24.9 1.0 O A:HOH208 2.2 33.4 1.0 OE2 B:GLU5 2.8 18.2 1.0 CD B:GLU5 2.8 25.7 1.0 CD A:GLU53 2.9 24.9 1.0 OE2 A:GLU53 3.1 26.0 1.0 O A:HOH205 4.2 32.1 1.0 CG A:GLU53 4.3 19.9 1.0 CG B:GLU5 4.3 21.7 1.0 ZN A:ZN102 5.0 27.6 1.0

Zinc binding site 2 out of 9 in the Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:27.6 occ:1.00 OE2 A:GLU17 2.0 20.8 1.0 OE1 A:GLU17 2.4 19.3 1.0 CD A:GLU17 2.5 20.1 1.0 CG A:GLU17 4.0 16.8 1.0 CG1 A:ILE14 4.3 18.3 1.0 O A:HOH205 4.6 32.1 1.0 CB A:GLU17 4.7 16.9 1.0 CA A:ILE14 4.8 13.4 1.0 ZN A:ZN101 5.0 28.7 1.0

Zinc binding site 3 out of 9 in the Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn103 b:53.8 occ:1.00 OD1 A:ASP49 2.1 33.9 1.0 O A:HOH202 2.3 28.3 1.0 OD2 A:ASP45 2.5 32.2 1.0 CG A:ASP49 2.8 31.0 1.0 OD2 A:ASP49 2.8 37.4 1.0 CG A:ASP45 2.9 33.2 1.0 OD1 A:ASP45 2.9 39.2 1.0 O A:ASP45 3.5 30.2 1.0 CB A:ASP45 4.2 28.4 1.0 C A:ASP45 4.2 27.5 1.0 CB A:ASP49 4.2 23.3 1.0 CA A:ASP45 4.3 27.2 1.0 N A:ASP49 4.4 25.6 1.0 CA A:ASP49 4.7 24.6 1.0 CB A:MET48 4.8 31.7 1.0 CE A:LYS18 4.9 43.1 1.0

Zinc binding site 4 out of 9 in the Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn104 b:57.6 occ:1.00 O B:HOH203 2.1 28.4 1.0 O A:HOH207 2.3 33.1 1.0 O A:HOH204 2.5 26.1 1.0 OE1 A:GLU23 2.5 38.4 1.0 OE2 A:GLU23 3.3 42.1 1.0 CD A:GLU23 3.3 40.7 1.0 N B:SER3 4.0 25.4 1.0 OE2 B:GLU77 4.0 28.7 1.0 OG A:SER13 4.3 21.0 1.0 CE A:LYS12 4.5 28.5 1.0 CA B:SER3 4.7 17.4 1.0 CG A:GLU23 4.7 32.1 1.0 NZ A:LYS12 4.9 36.4 1.0 CD B:GLU77 4.9 29.1 1.0 OG A:SER9 5.0 21.4 1.0 CG B:GLU77 5.0 24.5 1.0

Zinc binding site 5 out of 9 in the Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn101 b:27.2 occ:1.00 OE1 B:GLU53 2.2 19.4 1.0 CD B:GLU53 2.9 25.7 1.0 OE2 B:GLU53 3.0 25.7 1.0 CG B:GLU53 4.3 17.9 1.0 ZN B:ZN102 5.0 27.4 1.0

Zinc binding site 6 out of 9 in the Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn102 b:27.4 occ:1.00 OE2 B:GLU17 2.1 21.1 1.0 OE1 B:GLU17 2.5 17.6 1.0 CD B:GLU17 2.6 21.7 1.0 CG B:GLU17 4.1 17.9 1.0 CG1 B:ILE14 4.4 22.3 1.0 CB B:GLU17 4.7 18.7 1.0 CA B:ILE14 4.8 15.1 1.0 ZN B:ZN101 5.0 27.2 1.0

Zinc binding site 7 out of 9 in the Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn103 b:55.4 occ:1.00 OD1 B:ASP49 2.3 27.6 1.0 O B:HOH202 2.4 27.2 1.0 OD1 B:ASP45 2.5 27.8 1.0 OD2 B:ASP49 2.7 33.4 1.0 OD2 B:ASP45 2.8 35.9 1.0 CG B:ASP49 2.8 32.0 1.0 CG B:ASP45 2.9 29.0 1.0 O B:ASP45 3.6 24.9 1.0 CB B:ASP45 4.2 26.8 1.0 C B:ASP45 4.3 24.7 1.0 CB B:ASP49 4.3 24.4 1.0 CA B:ASP45 4.5 27.9 1.0 N B:ASP49 4.6 23.5 1.0 CA B:ASP49 4.8 24.3 1.0 CB B:MET48 5.0 28.4 1.0

Zinc binding site 8 out of 9 in the Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn104 b:25.5 occ:1.00 OD1 B:ASP42 2.0 29.1 1.0 OD2 B:ASP39 2.2 34.0 1.0 OD1 B:ASP39 2.8 35.2 1.0 CG B:ASP39 2.8 31.9 1.0 CG B:ASP42 2.9 25.3 1.0 OD2 B:ASP42 3.1 26.4 1.0 CB B:ASP42 4.2 27.3 1.0 CB B:ASP39 4.3 31.5 1.0 N B:ASP42 4.4 27.8 1.0 CA B:ASP42 4.5 30.9 1.0 CB B:LEU41 4.6 33.9 1.0 N B:ASP39 4.9 32.9 1.0 C B:LEU41 5.0 32.3 1.0

Zinc binding site 9 out of 9 in the Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Crystal Structure of Apo Acyl Carrier Protein From Thermotoga Maritima within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn105 b:56.9 occ:1.00 OE1 B:GLU23 2.5 44.2 1.0 O B:HOH201 2.5 29.4 1.0 OE2 B:GLU23 3.1 43.4 1.0 CD B:GLU23 3.2 38.9 1.0 NZ B:LYS12 3.5 34.7 1.0 OG B:SER13 4.2 19.4 1.0 CE B:LYS12 4.6 24.7 1.0 CG B:GLU23 4.7 29.6 1.0

Y.Lee, A.Jang, M.C.Jeong, N.Park, J.W.Park, W.C.Lee, C.Cheong, Y.Kim. Structural Characterization of An Acp From Thermotoga Maritima: Insights Into Hyperthermal Adaptation Int J Mol Sci V. 21 2020.
ISSN: ESSN 1422-0067
DOI: 10.3390/IJMS21072600