Zinc in PDB 6ln0: Crystal Structure of Three Main Domains of Nonstructural Protein 3 From Coronavirus

The structure of Crystal Structure of Three Main Domains of Nonstructural Protein 3 From Coronavirus, PDB code: 6ln0 was solved by M.X.Li, G.Q.Peng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.02 / 2.46
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	139.922, 71.348, 64.433, 90, 92.26, 90
R / Rfree (%)	20.8 / 25.9

The binding sites of Zinc atom in the Crystal Structure of Three Main Domains of Nonstructural Protein 3 From Coronavirus (pdb code 6ln0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Three Main Domains of Nonstructural Protein 3 From Coronavirus, PDB code: 6ln0:

Zinc binding site 1 out of 1 in the Crystal Structure of Three Main Domains of Nonstructural Protein 3 From Coronavirus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Three Main Domains of Nonstructural Protein 3 From Coronavirus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:48.8 occ:1.00 SG A:CYS334 2.3 46.9 1.0 SG A:CYS335 2.3 46.4 1.0 SG A:CYS360 2.3 48.0 1.0 SG A:CYS363 2.3 55.7 1.0 CB A:CYS360 3.2 43.9 1.0 CB A:CYS334 3.3 54.8 1.0 CB A:CYS335 3.3 44.2 1.0 N A:CYS335 3.5 47.6 1.0 CB A:CYS363 3.5 51.5 1.0 C A:CYS334 4.0 49.8 1.0 OG1 A:THR332 4.0 40.4 1.0 CA A:CYS335 4.0 45.1 1.0 N A:CYS363 4.1 54.8 1.0 CA A:CYS334 4.2 51.7 1.0 CA A:CYS363 4.4 48.0 1.0 CB A:THR332 4.5 44.3 1.0 CB A:LYS362 4.6 56.6 1.0 CA A:CYS360 4.7 48.4 1.0 O A:CYS334 4.7 62.2 1.0 N A:CYS334 4.7 47.8 1.0 CG2 A:THR332 4.9 37.1 1.0

M.Li, G.Ye, Y.Si, Z.Shen, Z.Liu, Y.Shi, S.Xiao, Z.F.Fu, G.Peng. Structure of the Multiple Functional Domains From Coronavirus Nonstructural Protein 3. Emerg Microbes Infect V. 10 66 2021.
ISSN: ESSN 2222-1751
PubMed: 33327866
DOI: 10.1080/22221751.2020.1865840