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Zinc in PDB 6lac: The Structural Basis of the Beta-Carbonic Anhydrase Cafd (C39A Mutant) of the Filamentous Fungus Aspergillus Fumigatus

Enzymatic activity of The Structural Basis of the Beta-Carbonic Anhydrase Cafd (C39A Mutant) of the Filamentous Fungus Aspergillus Fumigatus

All present enzymatic activity of The Structural Basis of the Beta-Carbonic Anhydrase Cafd (C39A Mutant) of the Filamentous Fungus Aspergillus Fumigatus:
4.2.1.1;

Protein crystallography data

The structure of The Structural Basis of the Beta-Carbonic Anhydrase Cafd (C39A Mutant) of the Filamentous Fungus Aspergillus Fumigatus, PDB code: 6lac was solved by M.S.Jiin, S.Kim, N.J.Kim, S.Hong, S.Kim, J.Sung, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.92 / 1.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 84.085, 57.505, 72.733, 90.00, 111.23, 90.00
R / Rfree (%) 19.1 / 21

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structural Basis of the Beta-Carbonic Anhydrase Cafd (C39A Mutant) of the Filamentous Fungus Aspergillus Fumigatus (pdb code 6lac). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Structural Basis of the Beta-Carbonic Anhydrase Cafd (C39A Mutant) of the Filamentous Fungus Aspergillus Fumigatus, PDB code: 6lac:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6lac

Go back to Zinc Binding Sites List in 6lac
Zinc binding site 1 out of 2 in the The Structural Basis of the Beta-Carbonic Anhydrase Cafd (C39A Mutant) of the Filamentous Fungus Aspergillus Fumigatus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structural Basis of the Beta-Carbonic Anhydrase Cafd (C39A Mutant) of the Filamentous Fungus Aspergillus Fumigatus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:10.2
occ:1.00
OD1 A:ASP36 1.9 10.9 1.0
NE2 A:HIS89 2.1 11.2 1.0
SG A:CYS34 2.3 9.8 1.0
SG A:CYS92 2.3 11.4 1.0
CG A:ASP36 3.0 10.2 1.0
CE1 A:HIS89 3.0 10.4 1.0
CD2 A:HIS89 3.1 10.0 1.0
CB A:CYS34 3.1 9.4 1.0
CB A:CYS92 3.3 11.6 1.0
OD2 A:ASP36 3.4 12.9 1.0
CA A:CYS92 3.6 12.6 1.0
ND1 A:HIS89 4.1 10.0 1.0
O A:HOH311 4.1 10.4 1.0
N A:ASP36 4.2 9.6 1.0
CB A:ASP36 4.2 10.0 1.0
CG A:HIS89 4.2 9.2 1.0
C A:ASP36 4.2 10.3 1.0
CA A:ASP36 4.4 10.2 1.0
N A:SER37 4.4 9.7 1.0
N A:HIS93 4.4 13.8 1.0
C A:CYS92 4.4 13.0 1.0
CA A:CYS34 4.5 9.1 1.0
O A:ASP36 4.7 11.7 1.0
N A:ILE94 4.7 16.5 1.0
C A:CYS34 4.7 8.4 1.0
CB A:ILE94 4.8 15.9 1.0
N A:CYS92 4.8 12.5 1.0
CD1 A:ILE94 4.8 16.0 1.0
O A:HOH351 4.8 22.0 1.0
OD1 A:ASN60 4.9 10.0 1.0
CA A:SER37 4.9 10.4 1.0
CA A:GLY59 5.0 10.5 1.0

Zinc binding site 2 out of 2 in 6lac

Go back to Zinc Binding Sites List in 6lac
Zinc binding site 2 out of 2 in the The Structural Basis of the Beta-Carbonic Anhydrase Cafd (C39A Mutant) of the Filamentous Fungus Aspergillus Fumigatus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structural Basis of the Beta-Carbonic Anhydrase Cafd (C39A Mutant) of the Filamentous Fungus Aspergillus Fumigatus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:10.7
occ:1.00
OD1 B:ASP36 2.0 11.6 1.0
NE2 B:HIS89 2.1 11.1 1.0
SG B:CYS34 2.3 9.8 1.0
SG B:CYS92 2.3 11.2 1.0
CE1 B:HIS89 3.0 11.1 1.0
CG B:ASP36 3.0 11.6 1.0
CD2 B:HIS89 3.1 10.8 1.0
CB B:CYS34 3.1 8.1 1.0
CB B:CYS92 3.3 12.9 1.0
OD2 B:ASP36 3.4 14.6 1.0
CA B:CYS92 3.6 13.4 1.0
ND1 B:HIS89 4.1 11.2 1.0
O B:HOH315 4.1 10.8 1.0
N B:ASP36 4.2 10.2 1.0
CB B:ASP36 4.2 11.3 1.0
CG B:HIS89 4.2 11.1 1.0
C B:ASP36 4.3 11.8 1.0
N B:HIS93 4.3 13.6 1.0
N B:SER37 4.4 11.4 1.0
CA B:ASP36 4.4 11.3 1.0
C B:CYS92 4.5 13.5 1.0
CA B:CYS34 4.5 9.2 1.0
C B:CYS34 4.7 8.2 1.0
O B:ASP36 4.7 12.6 1.0
N B:ILE94 4.8 14.4 1.0
N B:CYS92 4.8 14.4 1.0
O B:HOH358 4.8 26.5 1.0
CD1 B:ILE94 4.8 15.6 1.0
CB B:ILE94 4.8 15.3 1.0
OD1 B:ASN60 4.9 10.0 1.0
CA B:SER37 4.9 11.8 1.0
CA B:GLY59 5.0 10.6 1.0
O B:CYS34 5.0 8.9 1.0

Reference:

M.S.Jin, S.Kim, N.J.Kim, S.Hong, S.Kim, J.Sung. The Structural Analysis of Non-Catalytic Zinc Binding Site in the Minor Beta-Carbonic Anhydrase Cafd To Be Published.
Page generated: Wed Dec 16 12:14:04 2020

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