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Zinc in PDB 6l8n: Crystal Structure of the K. Lactis RAD5

Protein crystallography data

The structure of Crystal Structure of the K. Lactis RAD5, PDB code: 6l8n was solved by M.Shen, S.Xiang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.86 / 3.60
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 188.539, 188.539, 198.231, 90.00, 90.00, 120.00
R / Rfree (%) 20.4 / 23.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the K. Lactis RAD5 (pdb code 6l8n). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the K. Lactis RAD5, PDB code: 6l8n:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6l8n

Go back to Zinc Binding Sites List in 6l8n
Zinc binding site 1 out of 2 in the Crystal Structure of the K. Lactis RAD5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the K. Lactis RAD5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1201

b:0.4
occ:1.00
SG A:CYS861 2.3 0.9 1.0
SG A:CYS885 2.3 0.1 1.0
SG A:CYS882 2.4 0.4 1.0
SG A:CYS858 2.5 0.8 1.0
CB A:CYS882 2.7 0.0 1.0
CB A:CYS885 3.3 0.4 1.0
CB A:CYS858 3.4 0.6 1.0
CB A:CYS861 3.6 0.2 1.0
N A:CYS882 3.8 0.8 1.0
CA A:CYS882 3.8 0.5 1.0
N A:CYS861 4.1 0.7 1.0
CA A:CYS861 4.5 0.2 1.0
CA A:CYS885 4.7 1.0 1.0
OG1 A:THR863 4.7 0.8 1.0
C A:CYS882 4.8 0.1 1.0
O A:CYS882 4.8 0.1 1.0
CA A:CYS858 4.8 0.9 1.0
CB A:ILE860 4.9 0.1 1.0
N A:CYS885 4.9 0.7 1.0

Zinc binding site 2 out of 2 in 6l8n

Go back to Zinc Binding Sites List in 6l8n
Zinc binding site 2 out of 2 in the Crystal Structure of the K. Lactis RAD5


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the K. Lactis RAD5 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1202

b:97.3
occ:1.00
ND1 A:HIS879 1.9 0.5 1.0
SG A:CYS902 2.3 0.0 1.0
SG A:CYS905 2.3 0.0 1.0
SG A:CYS877 2.3 0.2 1.0
CE1 A:HIS879 2.5 1.0 1.0
CG A:HIS879 3.0 0.1 1.0
CB A:CYS902 3.3 0.7 1.0
CB A:CYS905 3.6 0.4 1.0
NE2 A:HIS879 3.6 0.2 1.0
N A:CYS905 3.6 0.6 1.0
CB A:HIS879 3.6 0.1 1.0
CB A:CYS877 3.8 0.9 1.0
CD2 A:HIS879 3.8 0.5 1.0
CB A:TYR904 4.0 0.4 1.0
CA A:CYS905 4.2 0.9 1.0
OG1 A:THR875 4.2 0.5 1.0
C A:TYR904 4.4 0.0 1.0
CA A:TYR904 4.6 0.3 1.0
N A:TYR904 4.6 0.1 1.0
CA A:CYS902 4.7 0.4 1.0
CD2 A:TYR904 4.8 0.7 1.0
CG A:TYR904 4.9 0.3 1.0
C A:CYS905 4.9 0.5 1.0
CA A:CYS877 4.9 0.4 1.0
O A:CYS877 5.0 0.3 1.0

Reference:

M.Shen, S.Xiang. Structure and Function of RAD5 To Be Published.
Page generated: Wed Dec 16 12:13:54 2020

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