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Zinc in PDB 6kfs: Structure of Ccm Related Protein

Protein crystallography data

The structure of Structure of Ccm Related Protein, PDB code: 6kfs was solved by S.Jin, Y.G.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.71 / 1.20
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 93.363, 93.363, 177.834, 90.00, 90.00, 120.00
R / Rfree (%) 14.9 / 16.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Ccm Related Protein (pdb code 6kfs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Ccm Related Protein, PDB code: 6kfs:

Zinc binding site 1 out of 1 in 6kfs

Go back to Zinc Binding Sites List in 6kfs
Zinc binding site 1 out of 1 in the Structure of Ccm Related Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Ccm Related Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:11.6
occ:1.00
O A:HOH543 1.9 15.4 1.0
NE2 A:HIS101 2.1 9.2 1.0
SG A:CYS45 2.3 11.3 1.0
SG A:CYS125 2.3 10.8 1.0
HB2 A:ASP47 3.1 14.3 1.0
CE1 A:HIS101 3.1 10.1 1.0
CD2 A:HIS101 3.1 9.4 1.0
HA A:CYS125 3.1 14.0 1.0
HB3 A:CYS45 3.2 11.6 1.0
CB A:CYS125 3.2 9.7 1.0
HE1 A:HIS101 3.3 12.2 1.0
CB A:CYS45 3.3 9.6 1.0
HD2 A:HIS101 3.3 11.3 1.0
HB2 A:CYS125 3.3 11.6 1.0
HB2 A:CYS45 3.4 11.6 1.0
H A:GLY126 3.5 13.9 1.0
O A:HOH652 3.5 16.1 1.0
H A:SER127 3.6 13.3 1.0
CA A:CYS125 3.6 11.7 1.0
HA A:ALA71 3.7 11.7 1.0
H A:ALA71 3.7 12.1 1.0
N A:GLY126 3.9 11.6 1.0
CB A:ASP47 3.9 11.9 1.0
HB3 A:SER127 3.9 13.3 1.0
H A:ASP47 4.0 13.1 1.0
HB3 A:ASP47 4.0 14.3 1.0
C A:CYS125 4.1 10.0 1.0
HB3 A:CYS125 4.1 11.6 1.0
OD2 A:ASP47 4.1 13.3 1.0
ND1 A:HIS101 4.2 11.3 1.0
CG A:HIS101 4.2 10.0 1.0
HD21 A:ASN50 4.3 15.2 1.0
N A:SER127 4.4 11.1 1.0
N A:ALA71 4.5 10.1 1.0
CA A:ALA71 4.5 9.7 1.0
CG A:ASP47 4.6 11.2 1.0
H A:ALA128 4.6 12.8 1.0
CA A:CYS45 4.7 10.7 1.0
CB A:SER127 4.8 11.1 1.0
N A:ASP47 4.8 10.9 1.0
O A:HOH584 4.8 11.0 1.0
HB2 A:SER127 4.8 13.3 1.0
HA A:CYS124 4.9 15.2 1.0
N A:CYS125 4.9 12.4 1.0
ND2 A:ASN50 4.9 12.6 1.0
CA A:GLY126 4.9 13.3 1.0
HD22 A:ASN50 5.0 15.2 1.0
HD1 A:HIS101 5.0 13.6 1.0

Reference:

S.Jin, D.Vullo, S.Bua, A.Nocentini, C.T.Supuran, Y.G.Gao. Structural and Biochemical Characterization of Novel Carbonic Anhydrases From Phaeodactylum Tricornutum. Acta Crystallogr D Struct V. 76 676 2020BIOL.
ISSN: ISSN 2059-7983
PubMed: 32627740
DOI: 10.1107/S2059798320007202
Page generated: Tue Oct 29 01:39:23 2024

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