Zinc in PDB 6jew: K3U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii

All present enzymatic activity of K3U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii:
3.5.1.88;

The structure of K3U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii, PDB code: 6jew was solved by I.H.Lee, T.H.Ho, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.99 / 2.00
Space group	P 32
Cell size a, b, c (Å), α, β, γ (°)	39.493, 39.493, 187.119, 90.00, 90.00, 120.00
R / Rfree (%)	22.6 / 29.2

The structure of K3U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Zinc atom in the K3U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii (pdb code 6jew). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the K3U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii, PDB code: 6jew:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the K3U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of K3U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:32.0 occ:1.00 NE2 A:HIS138 2.0 30.8 1.0 NE2 A:HIS134 2.0 33.6 1.0 SG A:CYS92 2.3 32.4 1.0 CE1 A:HIS138 2.9 29.8 1.0 CD2 A:HIS134 2.9 29.5 1.0 CD2 A:HIS138 3.0 27.3 1.0 CE1 A:HIS134 3.1 33.5 1.0 CB A:CYS92 3.2 30.0 1.0 O A:HOH309 3.4 37.1 1.0 O A:HOH310 3.8 31.1 1.0 NE2 A:GLN51 3.8 25.6 1.0 OE1 A:GLN51 3.8 23.8 1.0 CA A:CYS92 3.9 32.7 1.0 CD A:GLN51 4.0 29.3 1.0 OE2 A:GLU135 4.1 37.0 1.0 ND1 A:HIS138 4.1 30.6 1.0 CG A:HIS138 4.1 26.4 1.0 CG A:HIS134 4.1 32.0 1.0 ND1 A:HIS134 4.2 29.7 1.0 O A:HOH307 4.4 28.3 1.0 OE1 A:GLU135 4.5 33.9 1.0 CD A:GLU135 4.6 33.1 1.0 O A:GLY91 4.6 36.0 1.0 C A:CYS92 4.6 32.6 1.0 N A:LEU93 4.6 29.0 1.0

Zinc binding site 2 out of 2 in the K3U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of K3U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn201 b:30.6 occ:1.00 NE2 B:HIS138 2.0 30.6 1.0 F B:K3U202 2.1 39.4 1.0 NE2 B:HIS134 2.1 30.6 1.0 SG B:CYS92 2.3 32.8 1.0 CE1 B:HIS138 2.9 30.5 1.0 CD2 B:HIS134 3.0 30.1 1.0 C12 B:K3U202 3.0 53.1 1.0 CD2 B:HIS138 3.1 27.1 1.0 F1 B:K3U202 3.1 56.9 1.0 CE1 B:HIS134 3.2 35.9 1.0 CB B:CYS92 3.3 31.4 1.0 O B:HOH306 3.5 37.9 1.0 NE2 B:GLN51 3.7 27.6 1.0 OE1 B:GLN51 3.8 26.7 1.0 CA B:CYS92 3.9 34.7 1.0 CD B:GLN51 4.0 33.2 1.0 F2 B:K3U202 4.0 56.1 1.0 ND1 B:HIS138 4.0 30.1 1.0 OE2 B:GLU135 4.1 39.0 1.0 C11 B:K3U202 4.1 61.6 1.0 CG B:HIS138 4.1 27.9 1.0 CG B:HIS134 4.2 31.2 1.0 ND1 B:HIS134 4.2 30.7 1.0 O B:HOH303 4.3 28.4 1.0 OE1 B:GLU135 4.5 33.6 1.0 C3 B:K3U202 4.5 60.7 1.0 O B:GLY91 4.6 37.9 1.0 CD B:GLU135 4.6 33.5 1.0 C B:CYS92 4.7 35.7 1.0 N B:LEU93 4.7 28.7 1.0 C4 B:K3U202 4.9 63.0 1.0

I.H.Lee, T.H.Ho, L.W.Kang. K3U Bound Crystal Peptide Deformylase From Acinetobacter Baumanii To Be Published.