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Zinc in PDB 6jdh: Crystal Structure of N-Acetyl Mannosmaine Kinase From Pasteurella Multocida

Enzymatic activity of Crystal Structure of N-Acetyl Mannosmaine Kinase From Pasteurella Multocida

All present enzymatic activity of Crystal Structure of N-Acetyl Mannosmaine Kinase From Pasteurella Multocida:
2.7.1.60;

Protein crystallography data

The structure of Crystal Structure of N-Acetyl Mannosmaine Kinase From Pasteurella Multocida, PDB code: 6jdh was solved by G.Thanuja, S.Ramaswamy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.57 / 1.90
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 126.336, 126.336, 82.420, 90.00, 90.00, 120.00
R / Rfree (%) 19.6 / 23

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of N-Acetyl Mannosmaine Kinase From Pasteurella Multocida (pdb code 6jdh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of N-Acetyl Mannosmaine Kinase From Pasteurella Multocida, PDB code: 6jdh:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6jdh

Go back to Zinc Binding Sites List in 6jdh
Zinc binding site 1 out of 2 in the Crystal Structure of N-Acetyl Mannosmaine Kinase From Pasteurella Multocida


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of N-Acetyl Mannosmaine Kinase From Pasteurella Multocida within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:28.6
occ:0.76
ND1 A:HIS156 2.2 31.1 1.0
SG A:CYS173 2.3 30.3 1.0
SG A:CYS168 2.4 30.9 1.0
SG A:CYS166 2.4 34.4 1.0
CB A:CYS166 2.9 29.7 1.0
CE1 A:HIS156 3.1 38.2 1.0
CB A:CYS173 3.2 27.2 1.0
CG A:HIS156 3.3 30.4 1.0
CB A:CYS168 3.5 33.1 1.0
OH B:TYR264 3.6 31.8 1.0
CB A:HIS156 3.7 25.6 1.0
CA A:HIS156 4.0 25.1 1.0
N A:CYS168 4.2 36.1 1.0
NE2 A:HIS156 4.3 34.3 1.0
CA A:CYS166 4.4 29.2 1.0
CD2 A:HIS156 4.4 30.2 1.0
CB A:ARG170 4.4 26.9 1.0
CA A:CYS168 4.4 31.3 1.0
CA A:CYS173 4.6 30.2 1.0
O A:GLY155 4.7 23.1 1.0
O A:ARG170 4.7 31.7 1.0
N A:ARG170 4.8 30.4 1.0
C A:CYS166 4.8 31.1 1.0
O A:HIS156 4.9 23.6 1.0
C A:HIS156 4.9 23.9 1.0
CZ B:TYR264 4.9 29.8 1.0
N A:HIS156 5.0 20.8 1.0
N A:GLY167 5.0 32.0 1.0

Zinc binding site 2 out of 2 in 6jdh

Go back to Zinc Binding Sites List in 6jdh
Zinc binding site 2 out of 2 in the Crystal Structure of N-Acetyl Mannosmaine Kinase From Pasteurella Multocida


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of N-Acetyl Mannosmaine Kinase From Pasteurella Multocida within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:31.8
occ:0.81
ND1 B:HIS156 2.1 37.3 1.0
SG B:CYS173 2.4 35.4 1.0
SG B:CYS168 2.4 35.6 1.0
SG B:CYS166 2.4 38.4 1.0
CB B:CYS166 3.0 31.6 1.0
CE1 B:HIS156 3.0 37.5 1.0
CB B:CYS173 3.2 30.4 1.0
CG B:HIS156 3.2 32.9 1.0
CB B:CYS168 3.4 38.0 1.0
CB B:HIS156 3.6 27.0 1.0
OH A:TYR264 3.6 33.9 1.0
CA B:HIS156 3.9 25.9 1.0
NE2 B:HIS156 4.2 37.0 1.0
N B:CYS168 4.2 45.8 1.0
CD2 B:HIS156 4.3 32.9 1.0
CA B:CYS168 4.4 38.6 1.0
CA B:CYS166 4.5 36.5 1.0
CB B:ARG170 4.5 30.0 1.0
O B:GLY155 4.6 27.6 1.0
CA B:CYS173 4.7 29.1 1.0
O B:ARG170 4.8 39.2 1.0
C B:HIS156 4.9 27.1 1.0
O B:HIS156 4.9 26.5 1.0
C B:CYS166 4.9 36.6 1.0
N B:HIS156 4.9 24.5 1.0
N B:ARG170 4.9 32.6 1.0
N B:GLY167 5.0 37.7 1.0
CZ A:TYR264 5.0 32.8 1.0

Reference:

G.Thanuja, S.Ramaswamy. Crystal Structure of N-Acetyl Mannosmaine Kinase From Pasteurella Multocida To Be Published.
Page generated: Wed Dec 16 12:04:06 2020

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