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Zinc in PDB 6j9f: Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7

Enzymatic activity of Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7

All present enzymatic activity of Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7:
2.7.7.6;

Other elements in 6j9f:

The structure of Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7 (pdb code 6j9f). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7, PDB code: 6j9f:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6j9f

Go back to Zinc Binding Sites List in 6j9f
Zinc binding site 1 out of 2 in the Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1502

b:0.9
occ:1.00
SG D:CYS88 2.6 84.0 1.0
SG D:CYS72 2.8 86.4 1.0
O D:CYS88 3.2 84.0 1.0
CB D:CYS85 3.2 83.1 1.0
SG D:CYS85 3.3 83.1 1.0
SG D:CYS70 3.4 80.2 1.0
CB D:CYS70 3.8 80.2 1.0
N D:CYS72 3.9 86.4 1.0
CB D:CYS88 4.0 84.0 1.0
CB D:CYS72 4.0 86.4 1.0
C D:CYS88 4.2 84.0 1.0
N D:LEU71 4.2 81.1 1.0
N D:CYS88 4.4 84.0 1.0
CA D:CYS88 4.4 84.0 1.0
CA D:CYS72 4.6 86.4 1.0
CA D:CYS85 4.8 83.1 1.0
CB D:LEU71 4.8 81.1 1.0
CG D:LYS87 4.8 87.4 1.0
CA D:LEU71 4.9 81.1 1.0
C D:LEU71 4.9 81.1 1.0
N D:GLY73 4.9 86.8 1.0
CA D:CYS70 5.0 80.2 1.0
C D:CYS70 5.0 80.2 1.0

Zinc binding site 2 out of 2 in 6j9f

Go back to Zinc Binding Sites List in 6j9f
Zinc binding site 2 out of 2 in the Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryo-Em Structure of Xanthomonos Oryzae Transcription Elongation Complex with the Bacteriophage Protein P7 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1503

b:76.0
occ:1.00
SG D:CYS890 2.6 65.8 1.0
SG D:CYS815 2.6 72.3 1.0
CB D:CYS900 2.7 57.6 1.0
SG D:CYS897 2.8 58.5 1.0
SG D:CYS900 3.0 57.6 1.0
CB D:CYS815 3.3 72.3 1.0
CB D:CYS890 3.4 65.8 1.0
CA D:CYS890 3.9 65.8 1.0
NH2 D:ARG885 3.9 63.3 1.0
CA D:CYS900 4.0 57.6 1.0
N D:GLU891 4.4 70.1 1.0
N D:CYS900 4.5 57.6 1.0
CA D:CYS815 4.5 72.3 1.0
CB D:CYS897 4.6 58.5 1.0
N D:CYS815 4.6 72.3 1.0
O D:SER889 4.7 59.3 1.0
N D:CYS897 4.7 58.5 1.0
C D:CYS890 4.7 65.8 1.0
CG2 D:THR817 5.0 76.9 1.0
N D:CYS890 5.0 65.8 1.0

Reference:

L.You, J.Shi, L.Shen, L.Li, C.Fang, C.Yu, W.Cheng, Y.Feng, Y.Zhang. Structural Basis For Transcription Antitermination at Bacterial Intrinsic Terminator. Nat Commun V. 10 3048 2019.
ISSN: ESSN 2041-1723
PubMed: 31296855
DOI: 10.1038/S41467-019-10955-X
Page generated: Wed Dec 16 12:03:53 2020

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