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Zinc in PDB 6j74: Complex of Ggtaseiii and Full-Length YKT6

Enzymatic activity of Complex of Ggtaseiii and Full-Length YKT6

All present enzymatic activity of Complex of Ggtaseiii and Full-Length YKT6:
2.5.1.60;

Protein crystallography data

The structure of Complex of Ggtaseiii and Full-Length YKT6, PDB code: 6j74 was solved by S.Goto-Ito, A.Yamagata, Y.Sato, S.Fukai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.54 / 3.21
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 119.218, 119.218, 212.577, 90.00, 90.00, 90.00
R / Rfree (%) 23.7 / 28.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Complex of Ggtaseiii and Full-Length YKT6 (pdb code 6j74). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Complex of Ggtaseiii and Full-Length YKT6, PDB code: 6j74:

Zinc binding site 1 out of 1 in 6j74

Go back to Zinc Binding Sites List in 6j74
Zinc binding site 1 out of 1 in the Complex of Ggtaseiii and Full-Length YKT6


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Complex of Ggtaseiii and Full-Length YKT6 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn402

b:0.8
occ:1.00
NE2 B:HIS290 2.3 56.8 1.0
OD2 B:ASP238 2.6 88.5 1.0
OD1 B:ASP238 3.1 88.2 1.0
CE1 B:HIS290 3.2 64.1 1.0
CG B:ASP238 3.2 72.0 1.0
CD2 B:HIS290 3.4 52.3 1.0
SG B:CYS240 3.5 84.0 1.0
CB B:ASP280 3.7 58.7 1.0
ND1 B:HIS290 4.4 66.9 1.0
CB B:CYS240 4.4 49.9 1.0
CG B:HIS290 4.5 52.1 1.0
CE2 B:PHE289 4.6 63.9 1.0
CG B:ASP280 4.6 56.5 1.0
OD2 B:ASP280 4.6 43.9 1.0
CB B:ASP238 4.7 54.8 1.0
CA B:ASP280 4.8 55.1 1.0

Reference:

S.Goto-Ito, R.Shirakawa, S.Fukai. Complex of Ggtaseiii and Full-Length YKT6 To Be Published.
Page generated: Wed Dec 16 12:03:43 2020

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