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Zinc in PDB 6j3d: Crystal Structure of Acetolactate Decarboxylase From Bacillus Subtilis Subspecies Spizizenii in Space Group P21212

Enzymatic activity of Crystal Structure of Acetolactate Decarboxylase From Bacillus Subtilis Subspecies Spizizenii in Space Group P21212

All present enzymatic activity of Crystal Structure of Acetolactate Decarboxylase From Bacillus Subtilis Subspecies Spizizenii in Space Group P21212:
4.1.1.5;

Protein crystallography data

The structure of Crystal Structure of Acetolactate Decarboxylase From Bacillus Subtilis Subspecies Spizizenii in Space Group P21212, PDB code: 6j3d was solved by S.I.Yoon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 87.276, 129.643, 45.721, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 19.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Acetolactate Decarboxylase From Bacillus Subtilis Subspecies Spizizenii in Space Group P21212 (pdb code 6j3d). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Acetolactate Decarboxylase From Bacillus Subtilis Subspecies Spizizenii in Space Group P21212, PDB code: 6j3d:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6j3d

Go back to Zinc Binding Sites List in 6j3d
Zinc binding site 1 out of 2 in the Crystal Structure of Acetolactate Decarboxylase From Bacillus Subtilis Subspecies Spizizenii in Space Group P21212


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Acetolactate Decarboxylase From Bacillus Subtilis Subspecies Spizizenii in Space Group P21212 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:17.1
occ:1.00
O A:HOH430 2.1 25.7 1.0
NE2 A:HIS193 2.1 12.8 1.0
ND1 A:HIS204 2.1 15.7 1.0
NE2 A:HIS191 2.1 15.8 1.0
O A:HOH406 2.2 28.5 1.0
O A:HOH542 2.3 19.1 1.0
CE1 A:HIS204 3.0 17.1 1.0
CE1 A:HIS191 3.0 14.5 1.0
CD2 A:HIS193 3.1 14.5 1.0
CE1 A:HIS193 3.1 12.8 1.0
CD2 A:HIS191 3.2 13.4 1.0
CG A:HIS204 3.2 15.0 1.0
CB A:HIS204 3.7 16.3 1.0
OE1 A:GLU251 3.8 32.2 1.0
OE1 A:GLU62 4.0 22.1 1.0
NH2 A:ARG142 4.1 26.7 1.0
NE2 A:HIS204 4.2 17.1 1.0
ND1 A:HIS191 4.2 14.5 1.0
ND1 A:HIS193 4.2 12.4 1.0
CG A:HIS193 4.2 12.1 1.0
CD2 A:HIS204 4.3 15.2 1.0
CG A:HIS191 4.3 13.3 1.0
CA A:HIS204 4.6 16.3 1.0
CD A:GLU251 4.8 33.9 1.0
CD1 A:ILE53 5.0 14.1 1.0

Zinc binding site 2 out of 2 in 6j3d

Go back to Zinc Binding Sites List in 6j3d
Zinc binding site 2 out of 2 in the Crystal Structure of Acetolactate Decarboxylase From Bacillus Subtilis Subspecies Spizizenii in Space Group P21212


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Acetolactate Decarboxylase From Bacillus Subtilis Subspecies Spizizenii in Space Group P21212 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:13.6
occ:1.00
NE2 B:HIS191 2.1 10.8 1.0
NE2 B:HIS193 2.1 11.3 1.0
ND1 B:HIS204 2.2 13.2 1.0
O B:HOH402 2.2 19.1 1.0
O B:HOH404 2.3 15.1 1.0
O B:HOH545 2.3 16.6 1.0
CE1 B:HIS204 3.0 13.1 1.0
CE1 B:HIS191 3.0 13.8 1.0
CE1 B:HIS193 3.1 10.8 1.0
CD2 B:HIS193 3.1 11.4 1.0
CD2 B:HIS191 3.2 11.4 1.0
CG B:HIS204 3.3 11.6 1.0
CB B:HIS204 3.7 10.2 1.0
OE1 B:GLU251 3.9 22.2 1.0
OE1 B:GLU62 4.0 16.0 1.0
NH2 B:ARG142 4.2 13.9 1.0
ND1 B:HIS191 4.2 11.7 1.0
NE2 B:HIS204 4.2 12.2 1.0
ND1 B:HIS193 4.2 9.0 1.0
CG B:HIS193 4.2 9.1 1.0
CG B:HIS191 4.3 10.5 1.0
CD2 B:HIS204 4.3 12.4 1.0
CA B:HIS204 4.6 9.9 1.0
CD B:GLU251 4.9 21.0 1.0
CD1 B:ILE53 5.0 13.9 1.0
O B:GLY54 5.0 10.6 1.0

Reference:

J.Eom, H.B.Oh, S.I.Yoon. Crystal Structure of Alpha-Acetolactate Decarboxylase From Bacillus Subtilis Subspecies Spizizeni. Korean J Microbiol. V. 55 9 2019.
ISSN: ISSN 0440-2413
DOI: 10.7845/KJM.2019.9005
Page generated: Wed Dec 16 12:02:37 2020

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