Atomistry » Zinc » PDB 6i0j-6iiu » 6igs
Atomistry »
  Zinc »
    PDB 6i0j-6iiu »
      6igs »

Zinc in PDB 6igs: Crystal Structure of Hprt From F. Tularensis with Zinc

Enzymatic activity of Crystal Structure of Hprt From F. Tularensis with Zinc

All present enzymatic activity of Crystal Structure of Hprt From F. Tularensis with Zinc:
2.4.2.8;

Protein crystallography data

The structure of Crystal Structure of Hprt From F. Tularensis with Zinc, PDB code: 6igs was solved by G.C.Pavithra, S.V.Kundapura, U.A.Ramagopal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.24 / 2.16
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 78.764, 90.193, 113.707, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 23.2

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Hprt From F. Tularensis with Zinc (pdb code 6igs). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Crystal Structure of Hprt From F. Tularensis with Zinc, PDB code: 6igs:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 6igs

Go back to Zinc Binding Sites List in 6igs
Zinc binding site 1 out of 8 in the Crystal Structure of Hprt From F. Tularensis with Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Hprt From F. Tularensis with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn203

b:32.6
occ:1.00
 OE2 A:GLU102 2.0 30.3 1.0
O A:HOH334 2.1 29.9 1.0
OD1 A:ASP103 2.1 27.5 1.0
O A:HOH312 2.3 34.4 1.0
O A:HOH305 2.3 31.9 1.0
O A:HOH318 2.5 24.4 1.0
CD A:GLU102 2.8 27.9 1.0
OE1 A:GLU102 3.0 28.6 1.0
CG A:ASP103 3.1 24.5 1.0
OD2 A:ASP103 3.5 27.2 1.0
O1 A:SO4201 3.7 33.5 1.0
N A:ASP103 4.1 20.6 1.0
CG A:GLU102 4.2 26.3 1.0
CB A:ASP103 4.4 22.2 1.0
N A:ILE104 4.4 23.5 1.0
O A:ILE104 4.4 23.9 1.0
CG1 A:VAL42 4.4 17.2 1.0
OG A:SER46 4.5 19.2 0.5
O A:VAL42 4.5 16.4 1.0
CA A:ASP103 4.7 21.9 1.0
O2 A:SO4201 4.8 43.0 1.0
CB A:VAL42 4.9 17.5 1.0
CB A:GLU102 4.9 24.9 1.0
S A:SO4201 4.9 34.6 1.0
CG2 A:ILE104 4.9 29.9 1.0
CA A:GLU102 5.0 21.3 1.0

Zinc binding site 2 out of 8 in 6igs

Go back to Zinc Binding Sites List in 6igs
Zinc binding site 2 out of 8 in the Crystal Structure of Hprt From F. Tularensis with Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Hprt From F. Tularensis with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn204

b:86.6
occ:1.00
 ND1 A:HIS109 1.9 56.6 1.0
OE2 A:GLU139 1.9 55.2 1.0
NE2 A:HIS112 2.3 57.6 1.0
CE1 A:HIS109 2.8 57.0 1.0
CE1 A:HIS112 2.9 55.2 1.0
CG A:HIS109 2.9 50.3 1.0
CD A:GLU139 3.0 62.9 1.0
CB A:HIS109 3.4 44.2 1.0
OE1 A:GLU139 3.4 59.4 1.0
CA A:HIS109 3.5 40.9 1.0
CD2 A:HIS112 3.6 56.1 1.0
NE2 A:HIS109 4.0 57.0 1.0
CD2 A:HIS109 4.0 53.9 1.0
ND1 A:HIS112 4.1 56.2 1.0
O A:HIS109 4.2 38.8 1.0
NH2 A:ARG140 4.3 91.3 1.0
CG A:GLU139 4.3 67.7 1.0
C A:HIS109 4.3 40.4 1.0
CG A:HIS112 4.5 52.3 1.0
N A:HIS109 4.5 38.7 1.0
CZ A:ARG140 4.8 89.6 1.0
NH1 A:ARG140 4.9 84.9 1.0

Zinc binding site 3 out of 8 in 6igs

Go back to Zinc Binding Sites List in 6igs
Zinc binding site 3 out of 8 in the Crystal Structure of Hprt From F. Tularensis with Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Hprt From F. Tularensis with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn202

b:17.3
occ:1.00
 NE2 B:HIS112 1.9 13.8 1.0
ND1 B:HIS109 1.9 21.7 1.0
OE2 B:GLU139 2.1 17.8 1.0
CE1 B:HIS109 2.7 22.5 1.0
CD B:GLU139 2.8 18.8 1.0
CD2 B:HIS112 2.8 13.5 1.0
OE1 B:GLU139 2.9 18.2 1.0
CE1 B:HIS112 3.0 14.3 1.0
CG B:HIS109 3.1 20.0 1.0
CA B:HIS109 3.6 16.7 1.0
CB B:HIS109 3.6 18.1 1.0
NH1 B:ARG140 3.7 19.7 1.0
NE2 B:HIS109 4.0 21.9 1.0
CG B:HIS112 4.0 13.6 1.0
ND1 B:HIS112 4.1 14.0 1.0
CD2 B:HIS109 4.1 21.4 1.0
O B:HIS109 4.2 16.7 1.0
CG B:GLU139 4.2 19.6 1.0
C B:HIS109 4.4 16.6 1.0
N B:HIS109 4.6 15.3 1.0
CZ B:ARG140 4.8 21.1 1.0
O B:GLY108 4.9 14.7 1.0
CE B:LYS113 4.9 20.7 1.0

Zinc binding site 4 out of 8 in 6igs

Go back to Zinc Binding Sites List in 6igs
Zinc binding site 4 out of 8 in the Crystal Structure of Hprt From F. Tularensis with Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Hprt From F. Tularensis with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn203

b:37.9
occ:1.00
 OD1 B:ASP103 2.2 24.7 1.0
O B:HOH322 2.2 23.2 1.0
OE2 B:GLU102 2.2 22.6 1.0
O B:HOH344 2.3 34.4 1.0
O B:HOH335 2.5 32.0 1.0
O B:HOH346 2.6 34.5 1.0
CD B:GLU102 2.9 22.0 1.0
CG B:ASP103 3.0 20.7 1.0
OE1 B:GLU102 3.1 23.2 1.0
OD2 B:ASP103 3.3 24.0 1.0
N B:ASP103 4.0 15.8 1.0
CG B:GLU102 4.0 22.3 1.0
OG B:SER46 4.2 13.0 0.5
CB B:ASP103 4.3 18.7 1.0
N B:ILE104 4.4 15.7 1.0
CG1 B:VAL42 4.4 11.5 1.0
O B:ILE104 4.5 17.3 1.0
O B:VAL42 4.6 11.3 1.0
CA B:ASP103 4.6 16.8 1.0
O B:HOH317 4.8 23.1 1.0
CB B:VAL42 4.8 11.4 1.0
CA B:GLU102 4.9 16.3 1.0
C B:GLU102 4.9 15.3 1.0
CG2 B:ILE104 5.0 20.1 1.0

Zinc binding site 5 out of 8 in 6igs

Go back to Zinc Binding Sites List in 6igs
Zinc binding site 5 out of 8 in the Crystal Structure of Hprt From F. Tularensis with Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Hprt From F. Tularensis with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn203

b:35.5
occ:1.00
 OE1 C:GLU102 1.9 39.7 1.0
O C:HOH302 2.0 36.9 1.0
O C:HOH301 2.3 23.7 1.0
OD1 C:ASP103 2.3 25.8 1.0
O C:HOH322 2.3 35.7 1.0
O C:HOH328 2.4 36.5 1.0
CD C:GLU102 2.8 35.3 1.0
CG C:ASP103 3.2 23.5 1.0
OE2 C:GLU102 3.3 36.1 1.0
OD2 C:ASP103 3.5 26.8 1.0
O3 C:SO4202 3.6 45.4 1.0
CG C:GLU102 3.8 32.1 1.0
N C:ASP103 4.1 20.5 1.0
OG C:SER46 4.2 19.0 0.5
O C:ILE104 4.3 23.2 1.0
N C:ILE104 4.4 19.8 1.0
CG1 C:VAL42 4.4 23.9 1.0
CB C:ASP103 4.5 21.4 1.0
O C:VAL42 4.6 26.0 1.0
CG2 C:ILE104 4.7 24.2 1.0
CA C:ASP103 4.8 20.7 1.0
O C:HOH319 4.8 26.7 1.0
CB C:GLU102 4.9 28.2 1.0
S C:SO4202 5.0 54.1 1.0
CB C:VAL42 5.0 24.9 1.0
CA C:GLU102 5.0 24.1 1.0

Zinc binding site 6 out of 8 in 6igs

Go back to Zinc Binding Sites List in 6igs
Zinc binding site 6 out of 8 in the Crystal Structure of Hprt From F. Tularensis with Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Hprt From F. Tularensis with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn204

b:36.0
occ:1.00
 NE2 C:HIS112 2.0 32.8 1.0
OE2 C:GLU139 2.1 31.6 1.0
ND1 C:HIS109 2.1 42.3 1.0
CD C:GLU139 2.8 29.3 1.0
CE1 C:HIS109 2.9 44.0 1.0
CE1 C:HIS112 3.0 35.3 1.0
CG C:HIS109 3.0 37.1 1.0
OE1 C:GLU139 3.0 31.7 1.0
CD2 C:HIS112 3.0 34.1 1.0
CB C:HIS109 3.4 33.2 1.0
CA C:HIS109 3.5 30.5 1.0
NH2 C:ARG140 3.5 46.9 1.0
NE2 C:HIS109 4.0 42.1 1.0
CD2 C:HIS109 4.0 40.9 1.0
ND1 C:HIS112 4.1 34.8 1.0
CG C:HIS112 4.1 33.9 1.0
CG C:GLU139 4.2 28.5 1.0
C C:HIS109 4.4 31.7 1.0
CZ C:ARG140 4.4 47.5 1.0
N C:HIS109 4.5 28.5 1.0
O C:HIS109 4.5 32.1 1.0
NE C:ARG140 4.6 44.4 1.0

Zinc binding site 7 out of 8 in 6igs

Go back to Zinc Binding Sites List in 6igs
Zinc binding site 7 out of 8 in the Crystal Structure of Hprt From F. Tularensis with Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Hprt From F. Tularensis with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn203

b:36.3
occ:1.00
 OD1 D:ASP103 2.2 30.8 1.0
OE1 D:GLU102 2.2 34.6 1.0
O D:HOH309 2.3 25.2 1.0
O D:HOH313 2.5 40.4 1.0
O D:HOH330 2.5 32.0 1.0
O D:HOH334 2.6 39.2 1.0
CD D:GLU102 2.9 30.9 1.0
CG D:ASP103 3.1 28.5 1.0
OE2 D:GLU102 3.2 31.5 1.0
OD2 D:ASP103 3.5 30.5 1.0
O2 D:SO4202 3.9 57.8 1.0
CG D:GLU102 4.1 29.7 1.0
N D:ASP103 4.1 22.6 1.0
CB D:ASP103 4.4 26.3 1.0
O D:ILE104 4.5 23.9 1.0
N D:ILE104 4.5 21.9 1.0
CG1 D:VAL42 4.5 21.6 1.0
O D:VAL42 4.5 18.7 1.0
CA D:ASP103 4.7 23.5 1.0
CG2 D:ILE104 4.9 25.3 1.0
CB D:VAL42 4.9 20.4 1.0
CA D:GLU102 5.0 24.0 1.0

Zinc binding site 8 out of 8 in 6igs

Go back to Zinc Binding Sites List in 6igs
Zinc binding site 8 out of 8 in the Crystal Structure of Hprt From F. Tularensis with Zinc


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of Hprt From F. Tularensis with Zinc within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn204

b:30.8
occ:1.00
 OE1 D:GLU139 1.8 29.8 1.0
ND1 D:HIS109 1.9 32.0 1.0
NE2 D:HIS112 2.0 29.9 1.0
CE1 D:HIS109 2.8 32.5 1.0
CD D:GLU139 2.8 31.9 1.0
CD2 D:HIS112 3.0 28.8 1.0
CG D:HIS109 3.0 29.8 1.0
CE1 D:HIS112 3.1 30.5 1.0
OE2 D:GLU139 3.3 31.9 1.0
CB D:HIS109 3.5 27.3 1.0
CA D:HIS109 3.5 26.7 1.0
NE2 D:HIS109 4.0 32.4 1.0
CD2 D:HIS109 4.1 30.6 1.0
CG D:HIS112 4.2 28.5 1.0
ND1 D:HIS112 4.2 30.1 1.0
CG D:GLU139 4.2 32.1 1.0
O D:HIS109 4.3 29.0 1.0
C D:HIS109 4.4 27.4 1.0
N D:HIS109 4.6 26.3 1.0
NH2 D:ARG140 4.8 44.9 1.0

Reference:

G.C.Pavithra, U.A.Ramagopal. Crystal Structure of Hypoxanthine Phosphoribosyltransferase From Francisella Tularensis To Be Published.
Page generated: Mon Oct 28 23:49:58 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy