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Zinc in PDB 6ieu: The Structure of TRIM66 Phd-Bromo Domain with Unmodified H3 N Terminal Peptide

Protein crystallography data

The structure of The Structure of TRIM66 Phd-Bromo Domain with Unmodified H3 N Terminal Peptide, PDB code: 6ieu was solved by J.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.61 / 1.79
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 100.266, 63.465, 33.303, 90.00, 101.67, 90.00
R / Rfree (%) 18.6 / 21.7

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of TRIM66 Phd-Bromo Domain with Unmodified H3 N Terminal Peptide (pdb code 6ieu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Structure of TRIM66 Phd-Bromo Domain with Unmodified H3 N Terminal Peptide, PDB code: 6ieu:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6ieu

Go back to Zinc Binding Sites List in 6ieu
Zinc binding site 1 out of 2 in the The Structure of TRIM66 Phd-Bromo Domain with Unmodified H3 N Terminal Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of TRIM66 Phd-Bromo Domain with Unmodified H3 N Terminal Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1201

b:28.7
occ:1.00
ND1 A:HIS993 2.1 28.1 1.0
SG A:CYS996 2.2 31.5 1.0
SG A:CYS976 2.3 30.5 1.0
SG A:CYS973 2.4 23.9 1.0
CB A:CYS973 3.0 27.8 1.0
CE1 A:HIS993 3.0 30.9 1.0
CG A:HIS993 3.1 30.8 1.0
CB A:CYS996 3.2 28.9 1.0
CB A:CYS976 3.4 27.1 1.0
CB A:HIS993 3.5 27.3 1.0
N A:CYS976 3.8 23.6 1.0
O2 C:GOL101 4.0 44.1 1.0
N A:HIS993 4.0 28.4 1.0
NE2 A:HIS993 4.2 32.8 1.0
CA A:CYS976 4.2 24.0 1.0
CD2 A:HIS993 4.2 31.8 1.0
CA A:HIS993 4.4 29.0 1.0
CA A:CYS973 4.5 24.1 1.0
C1 C:GOL101 4.6 43.5 1.0
CA A:CYS996 4.6 28.9 1.0
O1 C:GOL101 4.8 43.0 1.0
CB A:VAL975 4.8 24.3 1.0
C2 C:GOL101 4.8 43.6 1.0
O A:HOH1302 4.8 38.4 1.0
C A:CYS976 4.9 25.7 1.0
C A:VAL975 5.0 25.0 1.0
N A:LEU977 5.0 25.6 1.0

Zinc binding site 2 out of 2 in 6ieu

Go back to Zinc Binding Sites List in 6ieu
Zinc binding site 2 out of 2 in the The Structure of TRIM66 Phd-Bromo Domain with Unmodified H3 N Terminal Peptide


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Structure of TRIM66 Phd-Bromo Domain with Unmodified H3 N Terminal Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1202

b:29.1
occ:1.00
SG A:CYS988 2.3 29.9 1.0
SG A:CYS985 2.3 28.2 1.0
SG A:CYS1014 2.4 30.8 1.0
SG A:CYS1011 2.4 27.2 1.0
CB A:CYS985 3.2 27.0 1.0
CB A:CYS988 3.3 29.6 1.0
CB A:CYS1014 3.4 30.5 1.0
CB A:CYS1011 3.5 27.3 1.0
N A:CYS988 3.7 29.8 1.0
CA A:CYS988 4.0 29.2 1.0
N A:CYS1011 4.1 27.2 1.0
N A:CYS1014 4.2 29.4 1.0
CA A:CYS1011 4.3 26.0 1.0
CA A:CYS1014 4.4 30.6 1.0
O A:HOH1366 4.5 35.0 1.0
C A:ARG987 4.5 34.0 1.0
O A:HOH1399 4.5 41.4 1.0
C A:CYS988 4.6 27.7 1.0
CA A:CYS985 4.7 29.6 1.0
O A:CYS1011 4.7 28.9 1.0
O A:CYS988 4.7 30.8 1.0
C A:CYS1011 4.7 27.5 1.0
CB A:ARG987 4.8 33.2 1.0
N A:ARG987 4.9 30.6 1.0
CA A:ARG987 5.0 31.7 1.0

Reference:

J.Chen, J.Chen. N/A N/A.
Page generated: Wed Dec 16 12:00:22 2020

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