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Zinc in PDB 6h6t: Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)

Enzymatic activity of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)

All present enzymatic activity of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8):
1.16.3.1;

Protein crystallography data

The structure of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8), PDB code: 6h6t was solved by M.Kuenzle, M.Lach, T.Beck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.46 / 1.90
Space group P 4
Cell size a, b, c (Å), α, β, γ (°) 153.229, 153.229, 135.803, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 22.2

Other elements in 6h6t:

The structure of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Iron (Fe) 12 atoms
Chlorine (Cl) 6 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) (pdb code 6h6t). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8), PDB code: 6h6t:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in 6h6t

Go back to Zinc Binding Sites List in 6h6t
Zinc binding site 1 out of 6 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn201

b:34.0
occ:1.00
 CE1 C:HIS173 2.3 28.2 1.0
NE2 D:HIS173 2.4 38.6 1.0
CL C:CL203 2.4 30.9 1.0
NE2 C:HIS173 2.5 29.3 1.0
CE1 D:HIS173 2.9 40.1 1.0
CD2 D:HIS173 3.6 37.6 1.0
ND1 C:HIS173 3.6 33.7 1.0
CD2 C:HIS173 3.9 29.2 1.0
ND1 D:HIS173 4.2 38.3 1.0
CG C:HIS173 4.4 30.1 1.0
CG D:HIS173 4.5 33.5 1.0

Zinc binding site 2 out of 6 in 6h6t

Go back to Zinc Binding Sites List in 6h6t
Zinc binding site 2 out of 6 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn201

b:31.9
occ:0.25
 CL E:CL203 2.2 24.7 0.2
CE1 E:HIS173 2.5 25.4 1.0
NE2 E:HIS173 2.6 29.0 1.0
ND1 E:HIS173 3.8 29.2 1.0
CD2 E:HIS173 4.0 28.2 1.0
CG E:HIS173 4.5 25.3 1.0

Zinc binding site 3 out of 6 in 6h6t

Go back to Zinc Binding Sites List in 6h6t
Zinc binding site 3 out of 6 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn201

b:39.9
occ:0.25
 NE2 F:HIS173 2.4 37.2 1.0
CL F:CL203 2.6 31.1 0.2
CE1 F:HIS173 2.9 38.8 1.0
CD2 F:HIS173 3.7 38.6 1.0
ND1 F:HIS173 4.2 42.8 1.0
CG F:HIS173 4.6 39.4 1.0

Zinc binding site 4 out of 6 in 6h6t

Go back to Zinc Binding Sites List in 6h6t
Zinc binding site 4 out of 6 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Zn201

b:35.0
occ:0.25
 CL J:CL203 2.4 22.5 0.2
NE2 J:HIS173 2.4 25.1 1.0
CE1 J:HIS173 2.8 28.1 1.0
CD2 J:HIS173 3.7 26.1 1.0
ND1 J:HIS173 4.1 29.7 1.0
CG J:HIS173 4.6 24.1 1.0

Zinc binding site 5 out of 6 in 6h6t

Go back to Zinc Binding Sites List in 6h6t
Zinc binding site 5 out of 6 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn201

b:34.5
occ:1.00
 NE2 K:HIS173 2.2 29.8 1.0
CE1 G:HIS173 2.4 25.7 1.0
NE2 H:HIS173 2.4 33.9 1.0
CL G:CL203 2.4 27.9 1.0
O K:HOH329 2.5 38.8 1.0
NE2 G:HIS173 2.6 28.4 1.0
CE1 K:HIS173 2.7 28.1 1.0
CE1 H:HIS173 2.7 33.3 1.0
CD2 K:HIS173 3.5 30.4 1.0
ND1 G:HIS173 3.7 29.1 1.0
CD2 H:HIS173 3.7 32.5 1.0
CD2 G:HIS173 3.9 30.6 1.0
ND1 K:HIS173 4.0 33.6 1.0
ND1 H:HIS173 4.0 40.5 1.0
CG K:HIS173 4.4 28.1 1.0
CG G:HIS173 4.5 25.4 1.0
CG H:HIS173 4.5 28.8 1.0

Zinc binding site 6 out of 6 in 6h6t

Go back to Zinc Binding Sites List in 6h6t
Zinc binding site 6 out of 6 in the Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Binary Crystal Structure of Positively and Negatively Supercharged Variants Ftn(Pos) and Ftn(Neg) From Human Heavy Chain Ferritin (Propandiol Condition, Coordination Number 8) within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Zn201

b:37.4
occ:0.25
 CL L:CL203 2.4 19.9 0.2
NE2 L:HIS173 2.4 33.5 1.0
CE1 L:HIS173 2.8 28.0 1.0
CD2 L:HIS173 3.7 32.8 1.0
ND1 L:HIS173 4.1 30.9 1.0
CG L:HIS173 4.6 27.6 1.0

Reference:

M.Kuenzle, M.Lach, T.Beck. Self-Assembly of Protein Crystals Into Different Crystal Structures Using Charged Patches on Oppositely Charged Ferritin Protein Containers To Be Published.
Page generated: Mon Oct 28 22:39:50 2024

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