Zinc in PDB 6h1c: Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.

The structure of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese., PDB code: 6h1c was solved by S.Nader, J.Perard, P.Carpentier, I.Michaud-Soret, S.Crouzy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.12 / 2.34
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	85.570, 85.570, 179.620, 90.00, 90.00, 120.00
R / Rfree (%)	20.1 / 26.8

The structure of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. also contains other interesting chemical elements:

Manganese

(Mn)

11 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Zinc atom in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. (pdb code 6h1c). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese., PDB code: 6h1c:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 12 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn209 b:100.0 occ:1.00 OE1 A:GLU3 3.0 59.8 1.0 O B:HOH340 3.3 45.9 1.0 ND2 A:ASN4 3.4 64.5 1.0 O A:VAL2 3.6 66.4 1.0 ZN B:ZN208 3.6 61.6 1.0 CA A:GLU3 3.8 59.7 1.0 N B:MET1 4.0 58.5 1.0 CD A:GLU3 4.0 65.1 1.0 O B:MET1 4.0 59.0 1.0 C A:VAL2 4.0 66.7 1.0 N A:ASN4 4.1 57.1 1.0 N A:GLU3 4.2 64.3 1.0 OD2 B:ASP26 4.4 53.5 1.0 CG A:ASN4 4.5 56.8 1.0 C A:GLU3 4.5 53.9 1.0 CG A:GLU3 4.5 64.2 1.0 C B:MET1 4.6 59.6 1.0 CB A:VAL2 4.6 30.0 1.0 O A:HOH340 4.6 39.3 1.0 CA B:MET1 4.7 62.3 1.0 CB A:GLU3 4.7 57.1 1.0 OE2 A:GLU3 4.9 57.0 1.0 OE2 B:GLU3 4.9 58.1 1.0

Zinc binding site 2 out of 12 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn210 b:57.1 occ:1.00 ND1 A:HIS87 2.0 48.7 1.0 OD1 A:ASN125 2.3 38.8 1.0 OD1 A:ASP123 2.6 43.6 1.0 ZN A:ZN211 2.9 84.4 1.0 CG A:HIS87 2.9 41.1 1.0 CE1 A:HIS87 3.0 50.0 1.0 CG A:ASN125 3.2 34.5 1.0 CB A:HIS87 3.2 32.3 1.0 ND2 A:ASN125 3.4 41.6 1.0 CG A:ASP123 3.5 45.7 1.0 O A:ALA124 3.5 32.4 1.0 OD2 A:ASP123 3.8 55.9 1.0 CA A:HIS87 4.0 30.6 1.0 CD2 A:HIS87 4.1 49.5 1.0 NE2 A:HIS87 4.1 52.1 1.0 C A:ALA124 4.5 33.8 1.0 CB A:ASN125 4.6 22.4 1.0 O A:ALA86 4.7 37.9 1.0 CG1 A:VAL68 4.7 27.9 1.0 N A:HIS87 4.8 35.2 1.0 CB A:ASP123 4.9 35.6 1.0 CA A:ASN125 4.9 24.5 1.0 CG2 A:VAL68 4.9 34.6 1.0 N A:ALA124 5.0 28.8 1.0 O A:HOH339 5.0 28.8 1.0

Zinc binding site 3 out of 12 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn211 b:84.4 occ:1.00 OD2 A:ASP123 2.7 55.9 1.0 ZN A:ZN210 2.9 57.1 1.0 CG A:ASP123 3.1 45.7 1.0 OD1 A:ASP123 3.2 43.6 1.0 CE1 A:HIS87 3.5 50.0 1.0 ND1 A:HIS87 3.6 48.7 1.0 CB A:ASP123 4.2 35.6 1.0 CG2 A:VAL68 4.3 34.6 1.0 NE2 A:HIS87 4.8 52.1 1.0 OD1 A:ASN125 5.0 38.8 1.0 CG A:HIS87 5.0 41.1 1.0

Zinc binding site 4 out of 12 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn212 b:70.0 occ:1.00 OD2 A:ASP83 2.5 50.7 1.0 OD1 A:ASP83 3.0 45.6 1.0 CG A:ASP83 3.1 42.5 1.0 OE2 A:GLU100 3.5 28.6 1.0 OE1 A:GLU100 3.8 41.4 1.0 O A:GLU29 3.8 77.0 1.0 OE2 A:GLU80 3.9 27.4 1.0 CD A:GLU100 4.1 36.3 1.0 CG A:GLU80 4.2 32.8 1.0 O A:LEU81 4.5 39.3 1.0 CD A:GLU80 4.5 27.7 1.0 O A:HOH338 4.6 35.7 1.0 CB A:ASP83 4.6 35.0 1.0 NE2 A:GLN30 4.7 55.6 1.0 MN A:MN201 4.9 22.6 1.0 CB A:ALA86 5.0 39.7 1.0

Zinc binding site 5 out of 12 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn204 b:62.7 occ:1.00 OE2 B:GLU105 2.2 52.1 1.0 MN B:MN203 2.9 64.3 0.5 CD B:GLU105 3.1 56.0 1.0 O B:HOH331 3.3 42.8 1.0 CG B:GLU105 3.6 43.4 1.0 OE1 B:GLU105 4.2 61.5 1.0 CD B:ARG109 4.3 41.5 1.0 CB B:ARG109 4.3 34.3 1.0 CG B:ARG109 4.4 35.3 1.0 O B:HOH337 4.6 44.9 1.0 O B:GLU105 4.8 37.1 1.0

Zinc binding site 6 out of 12 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn205 b:33.1 occ:1.00 OE2 B:GLU80 1.7 30.9 1.0 OE2 B:GLU100 1.7 32.6 1.0 NE2 B:HIS32 2.1 36.5 1.0 NE2 B:HIS89 2.1 24.5 1.0 CD B:GLU80 2.4 28.7 1.0 OE1 B:GLU80 2.8 31.6 1.0 CD B:GLU100 2.8 36.9 1.0 CD2 B:HIS32 2.9 37.8 1.0 CE1 B:HIS89 3.0 22.8 1.0 CD2 B:HIS89 3.1 23.3 1.0 CE1 B:HIS32 3.1 38.5 1.0 CG B:GLU100 3.3 30.0 1.0 CG B:GLU80 3.7 32.8 1.0 CD B:ARG31 3.8 43.7 1.0 OE1 B:GLU100 3.9 37.2 1.0 CG B:HIS32 4.1 32.1 1.0 O B:GLY85 4.1 38.6 1.0 ND1 B:HIS32 4.1 37.8 1.0 ND1 B:HIS89 4.1 20.9 1.0 CG B:HIS89 4.2 16.9 1.0 CG B:ARG31 4.4 47.4 1.0 CA B:ALA86 4.5 34.0 1.0 NH1 B:ARG31 4.5 35.2 1.0 CB B:GLU80 4.7 26.4 1.0 CB B:GLU100 4.7 25.5 1.0 NE B:ARG31 4.8 48.6 1.0 C B:GLY85 4.9 41.2 1.0

Zinc binding site 7 out of 12 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn206 b:61.6 occ:1.00 ND1 B:HIS70 1.9 26.1 1.0 ZN B:ZN207 1.9 74.1 1.0 CE1 B:HIS70 2.5 29.4 1.0 ND2 B:ASN125 2.9 31.9 1.0 CG B:HIS70 3.1 27.4 1.0 CB B:HIS70 3.8 19.6 1.0 NE2 B:HIS70 3.8 28.6 1.0 CG B:ASN125 3.9 46.1 1.0 CD2 B:HIS70 4.1 27.5 1.0 CA B:HIS70 4.1 24.5 1.0 OD1 B:ASN125 4.2 47.1 1.0 O B:ARG69 4.5 28.2 1.0 CG2 B:VAL127 4.5 26.2 1.0 CE1 B:PHE72 4.6 23.1 1.0 O B:HOH307 4.6 19.0 1.0 O B:HOH343 4.7 37.4 1.0

Zinc binding site 8 out of 12 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn207 b:74.1 occ:1.00 ZN B:ZN206 1.9 61.6 1.0 ND1 B:HIS70 3.1 26.1 1.0 CB B:HIS70 3.6 19.6 1.0 N B:ASN71 3.7 23.0 1.0 CG B:HIS70 3.7 27.4 1.0 CA B:HIS70 3.8 24.5 1.0 CE1 B:HIS70 4.1 29.4 1.0 CE1 B:PHE72 4.3 23.1 1.0 C B:HIS70 4.3 24.9 1.0 O B:ASN71 4.4 27.4 1.0 ND2 B:ASN125 4.4 31.9 1.0 CG2 B:VAL127 4.5 26.2 1.0 CD1 B:PHE72 4.5 23.8 1.0 C B:ASN71 4.6 24.2 1.0 CA B:ASN71 4.8 23.4 1.0 O B:ARG69 4.9 28.2 1.0 CD2 B:HIS70 5.0 27.5 1.0

Zinc binding site 9 out of 12 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn208 b:61.6 occ:1.00 OE2 B:GLU3 2.0 58.1 1.0 O A:HOH340 2.3 39.3 1.0 OD2 B:ASP26 2.7 53.5 1.0 CD B:GLU3 3.1 55.2 1.0 O B:MET1 3.4 59.0 1.0 OE1 A:GLU3 3.4 59.8 1.0 OE1 B:GLU3 3.6 60.2 1.0 ZN A:ZN209 3.6 100.0 1.0 CG B:ASP26 3.6 55.8 1.0 CB B:ASP26 3.8 49.0 1.0 N B:MET1 4.0 58.5 1.0 NE2 B:GLN23 4.2 63.0 1.0 CA B:GLN23 4.3 43.7 1.0 CG B:GLU3 4.3 49.9 1.0 CG B:GLN23 4.4 48.7 1.0 CD A:GLU3 4.5 65.1 1.0 C B:MET1 4.5 59.6 1.0 CB B:GLN23 4.5 42.0 1.0 O A:VAL2 4.8 66.4 1.0 O B:GLN23 4.8 39.2 1.0 OE2 A:GLU3 4.8 57.0 1.0 OD1 B:ASP26 4.8 61.9 1.0 CD B:GLN23 4.9 58.5 1.0 CA B:MET1 4.9 62.3 1.0 SD B:MET1 5.0 69.1 1.0

Zinc binding site 10 out of 12 in the Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Structure of Ferric Uptake Regulator From Pseudomonas Aeruginosa with Manganese. within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn209 b:51.1 occ:1.00 O B:HOH304 2.0 31.2 1.0 O B:HOH303 2.2 48.0 1.0 OE2 B:GLU107 2.2 52.3 1.0 OD2 B:ASP88 2.4 43.4 1.0 OE1 B:GLU107 2.6 48.7 1.0 CD B:GLU107 2.7 48.4 1.0 O B:HOH347 2.7 46.9 1.0 OD1 B:ASP88 3.0 35.0 1.0 CG B:ASP88 3.1 35.7 1.0 O B:HOH346 3.3 52.5 1.0 CB B:HIS87 4.2 32.4 1.0 O B:HOH318 4.2 37.7 1.0 CG B:GLU107 4.3 39.4 1.0 OE1 B:GLN110 4.4 41.3 1.0 CB B:ASP88 4.6 27.3 1.0 O B:HIS87 4.8 32.0 1.0 C B:HIS87 4.8 28.4 1.0 CB B:ALA124 4.9 28.4 1.0 O B:SER84 4.9 61.9 1.0 CG B:HIS87 5.0 42.4 1.0

S.Nader, J.Perard, P.Carpentier, I.Michaud-Soret, S.Crouzy. Ferric Uptake Regulator with Mn and Zn Form Pseudomonas Aeruginosa To Be Published.