Zinc in PDB 6h0z: Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067

Protein crystallography data

The structure of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067, PDB code: 6h0z was solved by P.H.Malecki, M.S.Weiss, U.Heinemann, A.Link, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.19 / 1.34
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 71.900, 71.900, 151.251, 90.00, 90.00, 90.00
R / Rfree (%) 12.9 / 15.1

Other elements in 6h0z:

The structure of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067 also contains other interesting chemical elements:

Nickel (Ni) 1 atom
Bromine (Br) 1 atom
Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067 (pdb code 6h0z). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067, PDB code: 6h0z:

Zinc binding site 1 out of 1 in 6h0z

Go back to Zinc Binding Sites List in 6h0z
Zinc binding site 1 out of 1 in the Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:19.4
occ:1.00
NE2 A:HIS244 2.1 17.1 1.0
SG A:CYS310 2.3 22.7 1.0
SG A:CYS238 2.3 20.4 1.0
SG A:CYS312 2.3 22.5 1.0
CE1 A:HIS244 3.0 17.2 1.0
CD2 A:HIS244 3.1 16.3 1.0
CB A:CYS238 3.1 21.8 1.0
CB A:CYS312 3.4 24.9 1.0
CB A:CYS310 3.4 22.6 1.0
N A:CYS312 3.9 26.5 1.0
CA A:CYS310 4.1 22.8 1.0
CA A:CYS312 4.2 27.2 1.0
ND1 A:HIS244 4.2 16.0 1.0
CG A:HIS244 4.2 15.2 1.0
O A:HOH667 4.3 31.1 1.0
CB A:GLU314 4.4 50.8 1.0
CA A:CYS238 4.5 22.2 1.0
N A:GLU314 4.5 49.1 1.0
N A:SER311 4.6 25.6 1.0
C A:CYS310 4.6 25.6 1.0
O A:HOH841 4.6 38.6 1.0
C A:CYS312 4.7 31.8 1.0
O A:ALA240 4.7 15.4 1.0
N A:GLY313 4.8 36.5 1.0
CA A:PHE241 4.8 14.6 1.0
N A:ALA315 4.8 56.2 1.0
CG A:GLU314 4.9 51.8 1.0
C A:ALA240 4.9 17.0 1.0
CA A:GLU314 5.0 50.3 1.0

Reference:

P.H.Malecki, M.S.Weiss, U.Heinemann, A.Link. Crystal Structure of KDM4D with Tetrazolylhydrazide Ligand NR067 To Be Published.
Page generated: Wed Dec 16 11:54:22 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy