Zinc in PDB 6go1: Crystal Structure of A Bacillus Anthracis Peptidoglycan Deacetylase

The structure of Crystal Structure of A Bacillus Anthracis Peptidoglycan Deacetylase, PDB code: 6go1 was solved by P.Giastas, A.Andreou, E.E.Eliopoulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.66 / 2.59
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	41.723, 211.795, 46.784, 90.00, 91.82, 90.00
R / Rfree (%)	18.3 / 24.5

The binding sites of Zinc atom in the Crystal Structure of A Bacillus Anthracis Peptidoglycan Deacetylase (pdb code 6go1). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Bacillus Anthracis Peptidoglycan Deacetylase, PDB code: 6go1:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of A Bacillus Anthracis Peptidoglycan Deacetylase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Bacillus Anthracis Peptidoglycan Deacetylase within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:38.0 occ:1.00 NE2 A:HIS275 2.0 59.2 1.0 O A:HOH518 2.0 40.4 1.0 OD1 A:ASP213 2.0 52.2 1.0 NE2 A:HIS271 2.2 45.5 1.0 O A:ACT402 2.7 42.9 1.0 OXT A:ACT402 2.8 41.1 1.0 CD2 A:HIS275 2.9 58.2 1.0 CE1 A:HIS275 3.0 58.0 1.0 CG A:ASP213 3.0 53.8 1.0 CD2 A:HIS271 3.1 40.6 1.0 CE1 A:HIS271 3.1 40.2 1.0 C A:ACT402 3.1 45.2 1.0 OD2 A:ASP213 3.4 56.0 1.0 CB A:ASP212 4.0 31.3 1.0 ND1 A:HIS275 4.1 59.2 1.0 CG A:HIS275 4.1 54.4 1.0 ND1 A:HIS271 4.3 36.0 1.0 CG A:HIS271 4.3 39.3 1.0 CB A:ASP213 4.4 57.1 1.0 CA A:PRO309 4.5 38.2 1.0 CH3 A:ACT402 4.6 44.8 1.0 N A:ASP213 4.6 50.3 1.0 CA A:ASP213 4.7 54.5 1.0 OD2 A:ASP212 4.8 39.9 1.0 CB A:PRO309 4.8 35.7 1.0 N A:VAL310 4.8 43.5 1.0 C A:ASP212 4.8 44.0 1.0 CG A:ASP212 4.9 35.3 1.0 CD2 A:HIS155 4.9 36.8 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of A Bacillus Anthracis Peptidoglycan Deacetylase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Bacillus Anthracis Peptidoglycan Deacetylase within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn401 b:60.0 occ:1.00 OD1 B:ASP213 2.0 67.6 1.0 OXT B:ACT402 2.0 67.4 1.0 NE2 B:HIS275 2.1 77.2 1.0 O B:ACT402 2.1 66.6 1.0 NE2 B:HIS271 2.3 50.0 1.0 C B:ACT402 2.4 75.1 1.0 O B:HOH501 2.5 60.6 1.0 OD2 B:ASP213 2.5 55.4 1.0 CG B:ASP213 2.6 56.9 1.0 CD2 B:HIS275 2.8 71.0 1.0 CD2 B:HIS271 3.1 45.9 1.0 CE1 B:HIS275 3.3 75.6 1.0 CE1 B:HIS271 3.4 45.7 1.0 CB B:ASP212 3.9 33.9 1.0 CH3 B:ACT402 4.0 84.0 1.0 CG B:HIS275 4.0 66.1 1.0 CB B:ASP213 4.0 44.1 1.0 ND1 B:HIS275 4.2 71.9 1.0 CG B:HIS271 4.3 45.3 1.0 N B:ASP213 4.4 40.0 1.0 ND1 B:HIS271 4.4 43.3 1.0 C B:ASP212 4.5 38.5 1.0 C2 B:EDO404 4.5 46.8 1.0 CD2 B:HIS155 4.5 53.3 1.0 CA B:ASP213 4.5 38.5 1.0 OD1 B:ASP212 4.7 33.2 1.0 NE2 B:HIS155 4.7 51.6 1.0 O B:ASP212 4.7 45.4 1.0 CG B:ASP212 4.8 37.6 1.0 CA B:ASP212 4.8 36.9 1.0

A.Andreou, P.Giastas, S.Arnaouteli, M.Tzanodaskalaki, S.J.Tzartos, K.Bethanis, V.Bouriotis, E.E.Eliopoulos. The Putative Polysaccharide Deacetylase BA0331: Cloning, Expression, Crystallization and Structure Determination. Acta Crystallogr.,Sect.F V. 75 312 2019.
ISSN: ESSN 2053-230X
PubMed: 30950833
DOI: 10.1107/S2053230X19001766