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Zinc in PDB 6g8u: Crystal Structure of the Light Chain of Botulinum Neurotoxin X (Residues 2-427)

Protein crystallography data

The structure of Crystal Structure of the Light Chain of Botulinum Neurotoxin X (Residues 2-427), PDB code: 6g8u was solved by Y.Wu, R.Kammerer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.11 / 1.31
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.600, 86.950, 93.390, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 16.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Light Chain of Botulinum Neurotoxin X (Residues 2-427) (pdb code 6g8u). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Light Chain of Botulinum Neurotoxin X (Residues 2-427), PDB code: 6g8u:

Zinc binding site 1 out of 1 in 6g8u

Go back to Zinc Binding Sites List in 6g8u
Zinc binding site 1 out of 1 in the Crystal Structure of the Light Chain of Botulinum Neurotoxin X (Residues 2-427)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Light Chain of Botulinum Neurotoxin X (Residues 2-427) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:23.5
occ:1.00
OE1 A:GLU266 2.0 23.6 1.0
NE2 A:HIS227 2.1 19.4 1.0
NE2 A:HIS231 2.1 18.6 1.0
O A:HOH653 2.1 26.8 1.0
O A:HOH617 2.2 33.2 1.0
OE2 A:GLU266 2.2 24.8 1.0
CD A:GLU266 2.5 23.5 1.0
CD2 A:HIS227 3.0 19.0 1.0
CE1 A:HIS227 3.1 19.9 1.0
CE1 A:HIS231 3.1 18.4 1.0
CD2 A:HIS231 3.1 16.8 1.0
HD2 A:HIS227 3.2 22.8 1.0
HE1 A:HIS231 3.2 22.1 1.0
HE1 A:HIS227 3.3 23.9 1.0
HD2 A:HIS231 3.3 20.2 1.0
HH A:TYR363 3.6 35.3 1.0
HE1 A:TYR363 3.7 28.4 1.0
HH22 A:ARG242 3.8 59.9 0.5
CG A:GLU266 4.0 23.9 1.0
ND1 A:HIS227 4.2 20.3 1.0
NH2 A:ARG242 4.2 73.1 0.5
OE2 A:GLU228 4.2 24.3 1.0
OH A:TYR363 4.2 29.4 1.0
CG A:HIS227 4.2 17.7 1.0
ND1 A:HIS231 4.2 17.1 1.0
HG21 A:THR269 4.2 22.3 1.0
O A:HOH901 4.2 23.3 1.0
CG A:HIS231 4.2 15.4 1.0
HH21 A:ARG242 4.2 59.9 0.5
HA A:GLU266 4.3 23.1 1.0
CE1 A:TYR363 4.3 23.6 1.0
HG22 A:THR269 4.4 22.3 1.0
NH2 A:ARG242 4.4 49.9 0.5
HG3 A:GLU266 4.4 28.7 1.0
HG2 A:GLU266 4.4 28.7 1.0
HB A:THR269 4.4 19.8 1.0
O A:HOH689 4.5 41.5 1.0
OE1 A:GLU228 4.6 19.8 1.0
CZ A:TYR363 4.6 25.0 1.0
HB3 A:GLU266 4.7 25.3 1.0
CG2 A:THR269 4.7 18.6 1.0
CD A:GLU228 4.8 17.8 1.0
CB A:GLU266 4.8 21.1 1.0
O A:HOH997 4.8 41.4 1.0
O A:HOH849 4.9 43.5 1.0
HD1 A:HIS227 4.9 24.4 1.0
HD1 A:HIS231 5.0 20.6 1.0

Reference:

Y.Wu, R.Kammerer. Crystal Structure of the Light Chain of Botulinum Neurotoxin X (Residues 2-427) To Be Published.
Page generated: Wed Dec 16 11:51:19 2020

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