Atomistry » Zinc » PDB 6g4t-6gdc » 6g8b
Atomistry »
  Zinc »
    PDB 6g4t-6gdc »
      6g8b »

Zinc in PDB 6g8b: E. Coli Aminopeptidase N Solved By Native Sad From A Dataset Collected in 60 Second with Jungfrau Detector

Enzymatic activity of E. Coli Aminopeptidase N Solved By Native Sad From A Dataset Collected in 60 Second with Jungfrau Detector

All present enzymatic activity of E. Coli Aminopeptidase N Solved By Native Sad From A Dataset Collected in 60 Second with Jungfrau Detector:
3.4.11.2;

Protein crystallography data

The structure of E. Coli Aminopeptidase N Solved By Native Sad From A Dataset Collected in 60 Second with Jungfrau Detector, PDB code: 6g8b was solved by F.Leonarski, V.Olieric, S.Redford, M.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.79 / 2.37
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 122.109, 122.109, 172.021, 90.00, 90.00, 120.00
R / Rfree (%) 15.9 / 20.6

Other elements in 6g8b:

The structure of E. Coli Aminopeptidase N Solved By Native Sad From A Dataset Collected in 60 Second with Jungfrau Detector also contains other interesting chemical elements:

Bromine (Br) 1 atom
Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the E. Coli Aminopeptidase N Solved By Native Sad From A Dataset Collected in 60 Second with Jungfrau Detector (pdb code 6g8b). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the E. Coli Aminopeptidase N Solved By Native Sad From A Dataset Collected in 60 Second with Jungfrau Detector, PDB code: 6g8b:

Zinc binding site 1 out of 1 in 6g8b

Go back to Zinc Binding Sites List in 6g8b
Zinc binding site 1 out of 1 in the E. Coli Aminopeptidase N Solved By Native Sad From A Dataset Collected in 60 Second with Jungfrau Detector


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of E. Coli Aminopeptidase N Solved By Native Sad From A Dataset Collected in 60 Second with Jungfrau Detector within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1001

b:10.5
occ:1.00
O2 A:7MF1005 1.9 1.9 1.0
OE1 A:GLU320 2.0 8.3 1.0
NE2 A:HIS297 2.1 9.2 1.0
NE2 A:HIS301 2.1 1.9 1.0
O1 A:7MF1005 2.7 16.8 1.0
CD A:GLU320 2.8 10.1 1.0
C16 A:7MF1005 2.8 16.7 1.0
OE2 A:GLU320 2.9 13.5 1.0
CE1 A:HIS297 3.0 15.9 1.0
CD2 A:HIS297 3.1 14.7 1.0
CD2 A:HIS301 3.1 13.0 1.0
CE1 A:HIS301 3.1 12.9 1.0
HE1 A:HIS297 3.2 19.0 1.0
HE2 A:TYR381 3.2 11.6 1.0
HD2 A:HIS301 3.3 15.5 1.0
HD2 A:HIS297 3.3 17.6 1.0
HE1 A:HIS301 3.3 15.5 1.0
N1 A:7MF1005 3.6 11.3 1.0
C17 A:7MF1005 3.9 25.2 1.0
HA A:GLU320 3.9 17.4 1.0
OH A:TYR381 3.9 11.1 1.0
HG21 A:THR323 3.9 12.8 1.0
CE2 A:TYR381 3.9 9.7 1.0
C14 A:7MF1005 3.9 9.8 1.0
ND1 A:HIS297 4.1 11.0 1.0
HB A:THR323 4.1 19.3 1.0
CG A:HIS297 4.2 9.7 1.0
CG A:GLU320 4.2 7.7 1.0
ND1 A:HIS301 4.2 12.0 1.0
CG A:HIS301 4.3 14.1 1.0
CZ A:TYR381 4.3 17.0 1.0
HZ3 A:LYS319 4.5 13.2 1.0
OE1 A:GLU264 4.5 10.7 1.0
HG22 A:THR323 4.6 12.8 1.0
HB3 A:GLU320 4.6 11.1 1.0
CG2 A:THR323 4.6 10.7 1.0
HG3 A:GLU320 4.6 9.1 1.0
HH A:TYR381 4.6 13.3 1.0
C5 A:7MF1005 4.6 12.0 1.0
CA A:GLU320 4.7 14.5 1.0
CB A:GLU320 4.7 9.3 1.0
C15 A:7MF1005 4.8 23.8 1.0
HG2 A:GLU320 4.8 9.1 1.0
CB A:THR323 4.8 16.1 1.0
C7 A:7MF1005 4.8 11.6 1.0
C12 A:7MF1005 4.9 16.4 1.0
HD1 A:HIS297 4.9 13.1 1.0
OE2 A:GLU264 4.9 14.6 1.0
OE2 A:GLU298 5.0 15.9 1.0
CD A:GLU264 5.0 15.5 1.0
CD2 A:TYR381 5.0 4.6 1.0
HG21 A:VAL324 5.0 6.8 1.0

Reference:

F.Leonarski, S.Redford, A.Mozzanica, C.Lopez-Cuenca, E.Panepucci, K.Nass, D.Ozerov, L.Vera, V.Olieric, D.Buntschu, R.Schneider, G.Tinti, E.Froejdh, K.Diederichs, O.Bunk, B.Schmitt, M.Wang. Fast and Accurate Data Collection For Macromolecular Crystallography Using the Jungfrau Detector. Nat. Methods V. 15 799 2018.
ISSN: ESSN 1548-7105
PubMed: 30275593
DOI: 10.1038/S41592-018-0143-7
Page generated: Wed Dec 16 11:51:16 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy