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Zinc in PDB 6g86: Structure of CDC14 Bound to SIC1 Pxl Motif

Enzymatic activity of Structure of CDC14 Bound to SIC1 Pxl Motif

All present enzymatic activity of Structure of CDC14 Bound to SIC1 Pxl Motif:
3.1.3.48;

Protein crystallography data

The structure of Structure of CDC14 Bound to SIC1 Pxl Motif, PDB code: 6g86 was solved by S.Mouilleron, M.Kataria, F.Uhlmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 63.80 / 1.74
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 75.090, 94.321, 127.656, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 19.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of CDC14 Bound to SIC1 Pxl Motif (pdb code 6g86). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of CDC14 Bound to SIC1 Pxl Motif, PDB code: 6g86:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6g86

Go back to Zinc Binding Sites List in 6g86
Zinc binding site 1 out of 2 in the Structure of CDC14 Bound to SIC1 Pxl Motif


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of CDC14 Bound to SIC1 Pxl Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn407

b:26.9
occ:1.00
OE1 A:GLU193 1.9 29.6 1.0
NE2 A:HIS238 2.0 34.0 1.0
ND1 A:HIS195 2.0 32.2 1.0
NE2 A:HIS206 2.1 33.2 1.0
CD A:GLU193 2.7 25.1 1.0
OE2 A:GLU193 2.8 23.7 1.0
CE1 A:HIS195 2.9 32.7 1.0
CD2 A:HIS206 2.9 31.7 1.0
CD2 A:HIS238 3.0 31.0 1.0
CE1 A:HIS238 3.0 32.7 1.0
CG A:HIS195 3.1 30.6 1.0
CE1 A:HIS206 3.2 34.7 1.0
CB A:HIS195 3.5 27.4 1.0
CA A:HIS195 3.8 30.5 1.0
CD2 A:LEU207 4.0 29.4 1.0
NE2 A:HIS195 4.1 32.0 1.0
ND1 A:HIS238 4.1 31.4 1.0
CG A:HIS238 4.1 31.7 1.0
CG A:HIS206 4.2 34.9 1.0
CG A:GLU193 4.2 21.7 1.0
CD2 A:HIS195 4.2 31.4 1.0
ND1 A:HIS206 4.2 33.0 1.0
CD A:PRO196 4.3 35.1 1.0
N A:HIS195 4.7 30.2 1.0
O A:HOH785 4.7 34.6 1.0
CB A:GLU193 4.7 25.8 1.0
CB A:ASN235 4.8 25.5 1.0
CG A:LEU207 4.9 34.3 1.0
C A:HIS195 4.9 32.3 1.0

Zinc binding site 2 out of 2 in 6g86

Go back to Zinc Binding Sites List in 6g86
Zinc binding site 2 out of 2 in the Structure of CDC14 Bound to SIC1 Pxl Motif


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of CDC14 Bound to SIC1 Pxl Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn405

b:36.6
occ:1.00
ND1 B:HIS195 1.9 52.4 1.0
OE1 B:GLU193 2.0 45.4 1.0
NE2 B:HIS206 2.0 50.6 1.0
NE2 B:HIS238 2.0 42.8 1.0
CD B:GLU193 2.7 39.0 1.0
CE1 B:HIS195 2.7 51.2 1.0
OE2 B:GLU193 2.8 33.7 1.0
CE1 B:HIS206 2.9 49.5 1.0
CD2 B:HIS238 3.0 38.4 1.0
CE1 B:HIS238 3.0 40.7 1.0
CG B:HIS195 3.1 49.5 1.0
CD2 B:HIS206 3.1 48.8 1.0
CB B:HIS195 3.6 44.2 1.0
CD2 B:LEU207 3.9 39.6 1.0
NE2 B:HIS195 3.9 51.4 1.0
CA B:HIS195 3.9 45.8 1.0
ND1 B:HIS206 4.1 50.4 1.0
CD2 B:HIS195 4.1 51.5 1.0
ND1 B:HIS238 4.1 39.8 1.0
CG B:HIS238 4.1 36.6 1.0
CG B:GLU193 4.1 35.6 1.0
CG B:HIS206 4.2 50.0 1.0
CD B:PRO196 4.5 55.4 1.0
CB B:ASN235 4.6 29.6 1.0
O B:HOH712 4.7 35.1 1.0
CB B:GLU193 4.8 34.8 1.0
N B:HIS195 4.8 45.0 1.0
O B:HOH770 4.9 40.1 1.0
CG B:LEU207 5.0 39.1 1.0

Reference:

M.Kataria, S.Mouilleron, M.H.Seo, C.Corbi-Verge, P.M.Kim, F.Uhlmann. A Pxl Motif Promotes Timely Cell Cycle Substrate Dephosphorylation By the CDC14 Phosphatase. Nat. Struct. Mol. Biol. V. 25 1093 2018.
ISSN: ESSN 1545-9985
PubMed: 30455435
DOI: 10.1038/S41594-018-0152-3
Page generated: Wed Dec 16 11:51:14 2020

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