Zinc in PDB 6fj2: Structure of Thermolysin Solved From Sad Data Collected at the Peak of the Zn Absorption Edge on ID30B

Enzymatic activity of Structure of Thermolysin Solved From Sad Data Collected at the Peak of the Zn Absorption Edge on ID30B

All present enzymatic activity of Structure of Thermolysin Solved From Sad Data Collected at the Peak of the Zn Absorption Edge on ID30B:
3.4.24.27;

Protein crystallography data

The structure of Structure of Thermolysin Solved From Sad Data Collected at the Peak of the Zn Absorption Edge on ID30B, PDB code: 6fj2 was solved by A.A.Mccarthy, C.Mueller-Dieckmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 80.30 / 1.43
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.717, 92.717, 128.621, 90.00, 90.00, 120.00
R / Rfree (%) 14.4 / 16.4

Other elements in 6fj2:

The structure of Structure of Thermolysin Solved From Sad Data Collected at the Peak of the Zn Absorption Edge on ID30B also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Thermolysin Solved From Sad Data Collected at the Peak of the Zn Absorption Edge on ID30B (pdb code 6fj2). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Thermolysin Solved From Sad Data Collected at the Peak of the Zn Absorption Edge on ID30B, PDB code: 6fj2:

Zinc binding site 1 out of 1 in 6fj2

Go back to Zinc Binding Sites List in 6fj2
Zinc binding site 1 out of 1 in the Structure of Thermolysin Solved From Sad Data Collected at the Peak of the Zn Absorption Edge on ID30B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Thermolysin Solved From Sad Data Collected at the Peak of the Zn Absorption Edge on ID30B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1401

b:14.2
occ:1.00
 OE2 A:GLU166 2.0 12.0 1.0
NE2 A:HIS146 2.0 9.7 1.0
NE2 A:HIS142 2.0 9.4 1.0
O A:HOH1749 2.1 14.6 1.0
CD A:GLU166 2.8 12.4 1.0
CE1 A:HIS146 2.9 10.5 1.0
CD2 A:HIS142 3.0 8.8 1.0
OE1 A:GLU166 3.0 12.3 1.0
CE1 A:HIS142 3.0 9.7 1.0
CD2 A:HIS146 3.1 9.6 1.0
OH A:TYR157 3.9 14.4 1.0
ND1 A:HIS146 4.1 10.8 1.0
ND1 A:HIS142 4.1 9.1 1.0
CG A:HIS142 4.2 9.0 1.0
NE2 A:HIS231 4.2 12.5 1.0
CG A:HIS146 4.2 9.8 1.0
CG A:GLU166 4.2 10.7 1.0
OE1 A:GLU143 4.3 14.8 1.0
CB A:SER169 4.5 8.9 1.0
O A:HOH1717 4.5 17.5 1.0
CA A:VAL1411 4.6 13.8 1.0
OG A:SER169 4.7 9.4 1.0
CD2 A:HIS231 4.7 12.1 1.0
N A:VAL1411 4.8 18.0 1.0
CA A:GLU166 4.8 10.1 1.0
O A:HOH1545 4.8 46.6 1.0
O A:VAL1411 4.8 13.1 1.0
O A:HOH1822 4.9 38.0 1.0
CZ A:TYR157 4.9 13.6 1.0
C A:VAL1411 5.0 14.4 1.0
CE1 A:TYR157 5.0 13.9 1.0

Reference:

A.A.Mccarthy, R.Barrett, A.Beteva, H.Caserotto, F.Dobias, F.Felisaz, T.Giraud, M.Guijarro, R.Janocha, A.Khadrouche, M.Lentini, G.A.Leonard, M.Lopez Marrero, S.Malbet-Monaco, S.Mcsweeney, D.Nurizzo, G.Papp, C.Rossi, J.Sinoir, C.Sorez, J.Surr, O.Svensson, U.Zander, F.Cipriani, P.Theveneau, C.Mueller-Dieckmann. ID30B - A Versatile Beamline For Macromolecular Crystallography Experiments at the Esrf. J Synchrotron Radiat V. 25 1249 2018.
ISSN: ESSN 1600-5775
PubMed: 29979188
DOI: 10.1107/S1600577518007166
Page generated: Wed Dec 16 11:48:21 2020

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