Zinc in PDB 6fc3: Crystal Structure of the EIF4E-P20 Complex From Saccharomyces Cerevisiae

The structure of Crystal Structure of the EIF4E-P20 Complex From Saccharomyces Cerevisiae, PDB code: 6fc3 was solved by S.Gruener, E.Valkov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.78 / 1.75
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	102.016, 62.755, 44.732, 90.00, 106.99, 90.00
R / Rfree (%)	18.2 / 21.7

The binding sites of Zinc atom in the Crystal Structure of the EIF4E-P20 Complex From Saccharomyces Cerevisiae (pdb code 6fc3). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the EIF4E-P20 Complex From Saccharomyces Cerevisiae, PDB code: 6fc3:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of the EIF4E-P20 Complex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the EIF4E-P20 Complex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn301 b:22.4 occ:0.50 O A:HOH422 1.7 19.0 0.5 OE2 A:GLU83 2.1 19.3 1.0 OE1 A:GLU83 2.2 18.2 1.0 O A:HOH419 2.2 18.6 1.0 CD A:GLU83 2.5 20.3 1.0 O A:HOH401 3.5 29.4 1.0 O A:HOH495 3.7 31.0 1.0 OD2 A:ASP127 4.0 12.9 1.0 CG A:GLU83 4.0 22.6 1.0 HE1 A:HIS85 4.1 12.3 1.0 O A:HOH423 4.3 31.3 1.0 HG2 A:GLU83 4.3 27.2 1.0 HG3 A:GLU83 4.4 27.2 1.0 OE2 A:GLU128 4.7 28.5 1.0 HB3 A:GLU83 4.7 19.4 1.0 HB3 A:ASP127 4.8 12.1 1.0 CB A:GLU83 4.8 16.1 1.0 HB2 A:GLU83 4.9 19.4 1.0 CE1 A:HIS85 4.9 10.4 1.0 HB2 A:ASP127 4.9 12.1 1.0 HD1 A:HIS85 4.9 11.5 1.0 O A:HOH505 4.9 73.8 1.0 CG A:ASP127 5.0 10.1 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of the EIF4E-P20 Complex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the EIF4E-P20 Complex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn101 b:15.8 occ:1.00 OE1 B:GLU44 1.9 21.7 1.0 NE2 B:HIS39 2.0 18.8 1.0 OE2 B:GLU44 2.6 20.9 1.0 CD B:GLU44 2.6 20.4 1.0 CE1 B:HIS39 3.0 25.7 1.0 CD2 B:HIS39 3.1 18.2 1.0 HE1 B:HIS39 3.1 30.9 1.0 HD2 B:HIS39 3.3 21.9 1.0 HE1 B:PHE45 3.8 37.1 1.0 ND1 B:HIS39 4.1 21.0 1.0 CG B:GLU44 4.1 21.4 1.0 CG B:HIS39 4.2 18.8 1.0 HB2 B:GLU44 4.3 31.0 1.0 O B:HOH222 4.4 42.0 1.0 HG3 B:GLU44 4.5 25.5 1.0 CE1 B:PHE45 4.6 30.9 1.0 HG2 B:GLU44 4.6 25.5 1.0 HZ B:PHE45 4.7 34.0 1.0 CB B:GLU44 4.8 25.8 1.0 HD1 B:HIS39 4.9 25.2 1.0 O B:HIS39 5.0 28.3 1.0

S.Gruner, R.Weber, D.Peter, M.Y.Chung, C.Igreja, E.Valkov, E.Izaurralde. Structural Motifs in EIF4G and 4E-Bps Modulate Their Binding to EIF4E to Regulate Translation Initiation in Yeast. Nucleic Acids Res. V. 46 6893 2018.
ISSN: ESSN 1362-4962
PubMed: 30053226
DOI: 10.1093/NAR/GKY542