Zinc in PDB 6f1j: Structure of A Talaromyces Pinophilus GH62 Arabinofuranosidase in Complex with Aradnj at 1.25A Resolution

The structure of Structure of A Talaromyces Pinophilus GH62 Arabinofuranosidase in Complex with Aradnj at 1.25A Resolution, PDB code: 6f1j was solved by O.V.Moroz, L.Sobala, E.Blagova, T.Coyle, K.B.R.Morkeberg Krogh, P.Wei, K.Stubbs, K.S.Wilson, G.J.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.52 / 1.25
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	43.827, 88.978, 72.663, 90.00, 95.22, 90.00
R / Rfree (%)	12 / 13.6

The structure of Structure of A Talaromyces Pinophilus GH62 Arabinofuranosidase in Complex with Aradnj at 1.25A Resolution also contains other interesting chemical elements:

Calcium

(Ca)

2 atoms

The binding sites of Zinc atom in the Structure of A Talaromyces Pinophilus GH62 Arabinofuranosidase in Complex with Aradnj at 1.25A Resolution (pdb code 6f1j). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of A Talaromyces Pinophilus GH62 Arabinofuranosidase in Complex with Aradnj at 1.25A Resolution, PDB code: 6f1j:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Structure of A Talaromyces Pinophilus GH62 Arabinofuranosidase in Complex with Aradnj at 1.25A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of A Talaromyces Pinophilus GH62 Arabinofuranosidase in Complex with Aradnj at 1.25A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn406 b:8.4 occ:0.70 OE2 B:GLU220 1.9 12.4 1.0 NE2 A:HIS180 2.2 6.9 0.3 NE2 A:HIS180 2.2 11.3 0.7 N B:SER24 2.2 12.2 1.0 O B:SER24 2.2 15.7 1.0 O A:HOH505 2.3 22.6 1.0 O B:HOH501 2.3 14.1 1.0 CE1 A:HIS180 2.8 10.7 0.7 CD B:GLU220 2.9 9.2 1.0 C B:SER24 3.0 15.5 1.0 CA B:SER24 3.1 15.0 1.0 CE1 A:HIS180 3.1 7.1 0.3 CD2 A:HIS180 3.2 5.9 0.3 CD2 A:HIS180 3.3 9.9 0.7 CG B:GLU220 3.3 7.7 1.0 O A:ASN178 3.7 8.5 1.0 CB B:SER24 3.8 18.8 1.0 ND1 A:HIS180 4.0 9.4 0.7 OE1 B:GLU220 4.0 12.4 1.0 ND1 A:HIS180 4.2 6.4 0.3 CG A:HIS180 4.2 7.6 0.7 CG A:HIS180 4.2 6.1 0.3 N B:GLY25 4.3 16.1 1.0 O A:ASP205 4.6 10.0 1.0 OG B:SER24 4.6 21.5 1.0 CB B:GLU220 4.7 6.3 1.0 C A:ASN178 5.0 6.7 1.0

Zinc binding site 2 out of 2 in the Structure of A Talaromyces Pinophilus GH62 Arabinofuranosidase in Complex with Aradnj at 1.25A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of A Talaromyces Pinophilus GH62 Arabinofuranosidase in Complex with Aradnj at 1.25A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn403 b:8.8 occ:1.00 OE2 B:GLU88 1.9 9.4 1.0 CD B:GLU88 2.7 8.2 1.0 OE1 B:GLU88 2.8 8.4 1.0 OG B:SER84 4.1 8.3 1.0 CB B:SER84 4.1 7.2 1.0 O B:HOH531 4.2 17.5 1.0 O B:HOH566 4.2 25.7 1.0 CG B:GLU88 4.2 8.3 1.0 N B:SER84 4.3 7.0 1.0 CA B:SER84 4.8 7.4 1.0

O.V.Moroz, L.F.Sobala, E.Blagova, T.Coyle, W.Peng, K.B.R.Morkeberg Krogh, K.A.Stubbs, K.S.Wilson, G.J.Davies. Structure of A Talaromyces Pinophilus GH62 Arabinofuranosidase in Complex with Aradnj at 1.25 Angstrom Resolution. Acta Crystallogr F Struct V. 74 490 2018BIOL Commun.
ISSN: ESSN 2053-230X
PubMed: 30084398
DOI: 10.1107/S2053230X18000250