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Zinc in PDB 6f07: CBF3 Core Complex

Zinc Binding Sites:

The binding sites of Zinc atom in the CBF3 Core Complex (pdb code 6f07). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the CBF3 Core Complex, PDB code: 6f07:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 6f07

Go back to Zinc Binding Sites List in 6f07
Zinc binding site 1 out of 2 in the CBF3 Core Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of CBF3 Core Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn701

b:0.4
occ:1.00
O B:CYS14 2.2 0.2 1.0
N B:CYS14 2.2 0.2 1.0
SG B:CYS14 2.4 0.2 1.0
SG B:CYS24 2.5 0.9 1.0
CA B:CYS14 2.7 0.2 1.0
C B:CYS14 2.7 0.2 1.0
CB B:CYS17 2.9 0.5 1.0
CB B:CYS14 3.0 0.2 1.0
C B:PRO13 3.1 0.2 1.0
CB B:CYS24 3.4 0.9 1.0
SG B:CYS17 3.6 0.5 1.0
N B:CYS17 3.6 0.5 1.0
CA B:CYS17 3.7 0.5 1.0
CA B:PRO13 3.8 0.2 1.0
CB B:PRO13 3.9 0.2 1.0
O B:PRO13 4.0 0.2 1.0
N B:SER15 4.0 0.5 1.0
N B:THR18 4.2 0.9 1.0
C B:CYS17 4.3 0.5 1.0
CG2 B:THR18 4.5 0.9 1.0
CA B:CYS24 4.6 0.9 1.0
N B:VAL16 4.6 0.9 1.0
ZN B:ZN702 4.7 0.5 1.0
C B:VAL16 4.8 0.9 1.0
CA B:SER15 4.9 0.5 1.0
SG B:CYS30 4.9 0.8 1.0
C B:SER15 4.9 0.5 1.0

Zinc binding site 2 out of 2 in 6f07

Go back to Zinc Binding Sites List in 6f07
Zinc binding site 2 out of 2 in the CBF3 Core Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of CBF3 Core Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn702

b:0.5
occ:1.00
SG B:CYS33 2.5 0.8 1.0
SG B:CYS42 2.5 0.7 1.0
SG B:CYS14 2.5 0.2 1.0
SG B:CYS30 2.5 0.8 1.0
CB B:CYS42 3.0 0.7 1.0
CB B:CYS30 3.6 0.8 1.0
CB B:CYS14 3.6 0.2 1.0
CB B:CYS33 3.6 0.8 1.0
O B:PRO29 4.0 0.4 1.0
SG B:CYS17 4.0 0.5 1.0
CA B:CYS42 4.2 0.7 1.0
CB B:VAL16 4.3 0.9 1.0
C B:PRO29 4.4 0.4 1.0
CA B:CYS30 4.7 0.8 1.0
N B:CYS30 4.7 0.8 1.0
ZN B:ZN701 4.7 0.4 1.0
CG2 B:VAL16 4.7 0.9 1.0
N B:CYS33 4.8 0.8 1.0
CA B:CYS33 4.8 0.8 1.0
CG1 B:VAL16 4.9 0.9 1.0
N B:CYS17 4.9 0.5 1.0

Reference:

V.Leber, A.Nans, M.R.Singleton. Structural Basis For Assembly of the CBF3 Kinetochore Complex. Embo J. V. 37 269 2018.
ISSN: ESSN 1460-2075
PubMed: 29212814
DOI: 10.15252/EMBJ.201798134
Page generated: Wed Dec 16 11:45:27 2020

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