Zinc in PDB 6e8p: Ca IX Mimic Complexed with Steroidal Sulfamate Compound Stx 49

Enzymatic activity of Ca IX Mimic Complexed with Steroidal Sulfamate Compound Stx 49

All present enzymatic activity of Ca IX Mimic Complexed with Steroidal Sulfamate Compound Stx 49:
4.2.1.1;

Protein crystallography data

The structure of Ca IX Mimic Complexed with Steroidal Sulfamate Compound Stx 49, PDB code: 6e8p was solved by J.T.Andring, R.Mckenna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.95 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.591, 41.743, 72.597, 90.00, 104.04, 90.00
R / Rfree (%) 14.8 / 19.1

Zinc Binding Sites:

The binding sites of Zinc atom in the Ca IX Mimic Complexed with Steroidal Sulfamate Compound Stx 49 (pdb code 6e8p). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Ca IX Mimic Complexed with Steroidal Sulfamate Compound Stx 49, PDB code: 6e8p:

Zinc binding site 1 out of 1 in 6e8p

Go back to Zinc Binding Sites List in 6e8p
Zinc binding site 1 out of 1 in the Ca IX Mimic Complexed with Steroidal Sulfamate Compound Stx 49


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Ca IX Mimic Complexed with Steroidal Sulfamate Compound Stx 49 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn301

b:14.3
occ:1.00
ND1 A:HIS119 2.0 11.7 1.0
NE2 A:HIS94 2.0 14.6 1.0
N11 A:HZJ302 2.0 18.2 1.0
NE2 A:HIS96 2.0 12.4 1.0
CE1 A:HIS119 2.9 14.5 1.0
CD2 A:HIS94 2.9 12.9 1.0
CD2 A:HIS96 3.0 13.3 1.0
CE1 A:HIS96 3.1 14.6 1.0
CE1 A:HIS94 3.1 15.6 1.0
S08 A:HZJ302 3.1 13.8 1.0
CG A:HIS119 3.1 14.9 1.0
O10 A:HZJ302 3.4 13.8 1.0
CB A:HIS119 3.6 10.4 1.0
O07 A:HZJ302 3.6 19.9 1.0
OE1 A:GLU106 3.9 12.2 1.0
OG1 A:THR199 4.0 11.1 1.0
NE2 A:HIS119 4.0 13.2 1.0
CG A:HIS94 4.1 12.0 1.0
ND1 A:HIS94 4.1 13.7 1.0
ND1 A:HIS96 4.1 12.4 1.0
CG A:HIS96 4.1 11.5 1.0
CD2 A:HIS119 4.2 12.9 1.0
O09 A:HZJ302 4.4 18.2 1.0
CD A:GLU106 4.9 14.9 1.0
C02 A:HZJ302 5.0 14.3 1.0

Reference:

J.T.Andring, W.Dohle, C.Tu, B.V.L.Potter, R.Mckenna. 3,17 Beta-Bis-Sulfamoyloxy-2-Methoxyestra-1,3,5(10)-Triene and Nonsteroidal Sulfamate Derivatives Inhibit Carbonic Anhydrase IX: Structure-Activity Optimization For Isoform Selectivity. J. Med. Chem. V. 62 2202 2019.
ISSN: ISSN 1520-4804
PubMed: 30721041
DOI: 10.1021/ACS.JMEDCHEM.8B01990
Page generated: Wed Dec 16 11:42:04 2020

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