Zinc in PDB 6e54: Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Ligand PT802

Enzymatic activity of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Ligand PT802

All present enzymatic activity of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Ligand PT802:
3.5.1.108;

Protein crystallography data

The structure of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Ligand PT802, PDB code: 6e54 was solved by Seattle Structural Genomics Center For Infectious Disease, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.58 / 1.65
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 35.640, 47.740, 48.350, 111.68, 107.87, 99.27
R / Rfree (%) 14.9 / 18.5

Other elements in 6e54:

The structure of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Ligand PT802 also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Calcium (Ca) 2 atoms
Chlorine (Cl) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Ligand PT802 (pdb code 6e54). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Ligand PT802, PDB code: 6e54:

Zinc binding site 1 out of 1 in 6e54

Go back to Zinc Binding Sites List in 6e54
Zinc binding site 1 out of 1 in the Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Ligand PT802


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Ligand PT802 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn403

b:6.0
occ:1.00
 OD1 A:ASP241 2.0 6.5 1.0
O28 A:HUM401 2.0 18.2 0.4
NE2 A:HIS78 2.0 7.9 1.0
NE2 A:HIS237 2.1 5.7 1.0
O30 A:JCG402 2.1 17.6 0.6
O28 A:JCG402 2.2 18.0 0.6
O30 A:HUM401 2.3 18.4 0.4
CG A:ASP241 2.7 7.4 1.0
C27 A:HUM401 2.8 19.0 0.4
OD2 A:ASP241 2.8 9.4 1.0
C27 A:JCG402 2.9 18.8 0.6
N29 A:HUM401 2.9 18.9 0.4
N29 A:JCG402 2.9 18.8 0.6
CE1 A:HIS237 3.0 4.5 1.0
CE1 A:HIS78 3.0 12.0 1.0
CD2 A:HIS78 3.0 9.4 1.0
CD2 A:HIS237 3.1 7.7 1.0
OG1 A:THR190 3.9 7.6 1.0
ND1 A:HIS237 4.1 4.7 1.0
ND1 A:HIS78 4.1 14.7 1.0
CG A:HIS78 4.2 9.7 1.0
C02 A:HUM401 4.2 19.2 0.4
CB A:ASP241 4.2 4.5 1.0
CG A:HIS237 4.2 4.7 1.0
CG A:GLU77 4.2 6.7 1.0
CB A:THR190 4.2 6.1 1.0
OE2 A:GLU77 4.3 10.2 1.0
C02 A:JCG402 4.4 19.0 0.6
C01 A:HUM401 4.5 19.1 0.4
CE1 A:HIS264 4.8 8.1 1.0
CA A:THR190 4.8 5.0 1.0
C32 A:JCG402 4.8 19.1 0.6
NE2 A:HIS264 4.8 8.7 1.0
CA A:ASP241 4.8 4.5 1.0
CD A:GLU77 4.8 12.2 1.0
O A:HIS237 4.9 7.2 1.0
O33 A:JCG402 4.9 19.1 0.6
S31 A:JCG402 5.0 15.1 0.6

Reference:

S.L.Delker, S.J.Mayclin, J.N.Phan, J.Abendroth, D.Lorimer, T.E.Edwards. Crystal Structure of Lpxc From Pseudomonas Aeruginosa in Complex with Ligand PT802 To Be Published.
Page generated: Wed Dec 16 11:41:51 2020

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