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Zinc in PDB 6dqh: Cronobacter Sakazakii (Enterobacter Sakazakii) Metallo-Beta-Lactamse Harldq Motif

Protein crystallography data

The structure of Cronobacter Sakazakii (Enterobacter Sakazakii) Metallo-Beta-Lactamse Harldq Motif, PDB code: 6dqh was solved by M.Monteiro Pedroso, D.Waite, M.Natasa, R.Mcgeary, L.Guddat, P.Hugenholtz, G.Schenk, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.28 / 1.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.768, 68.601, 76.246, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 19.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Cronobacter Sakazakii (Enterobacter Sakazakii) Metallo-Beta-Lactamse Harldq Motif (pdb code 6dqh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cronobacter Sakazakii (Enterobacter Sakazakii) Metallo-Beta-Lactamse Harldq Motif, PDB code: 6dqh:

Zinc binding site 1 out of 1 in 6dqh

Go back to Zinc Binding Sites List in 6dqh
Zinc binding site 1 out of 1 in the Cronobacter Sakazakii (Enterobacter Sakazakii) Metallo-Beta-Lactamse Harldq Motif


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cronobacter Sakazakii (Enterobacter Sakazakii) Metallo-Beta-Lactamse Harldq Motif within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:8.8
occ:1.00
O A:HOH526 2.0 14.2 1.0
NE2 A:HIS192 2.1 8.2 1.0
ND1 A:HIS118 2.1 7.3 1.0
NE2 A:HIS116 2.1 8.3 1.0
O2 A:PO4405 2.3 13.9 0.9
O A:HOH525 2.5 25.4 1.0
CE1 A:HIS118 3.0 9.4 1.0
CE1 A:HIS116 3.0 7.8 1.0
CD2 A:HIS192 3.0 7.3 1.0
CD2 A:HIS116 3.0 6.4 1.0
HB2 A:HIS118 3.1 9.2 1.0
CE1 A:HIS192 3.1 9.1 1.0
CG A:HIS118 3.1 8.2 1.0
HE1 A:HIS118 3.1 11.3 1.0
HD2 A:HIS192 3.2 8.7 1.0
HE1 A:HIS116 3.2 9.3 1.0
HD2 A:HIS116 3.2 7.7 1.0
HE1 A:HIS192 3.3 10.9 1.0
P A:PO4405 3.5 10.6 0.9
CB A:HIS118 3.5 7.7 1.0
O1 A:PO4405 3.5 12.4 0.9
HB3 A:HIS118 3.7 9.2 1.0
ND1 A:HIS116 4.1 7.9 1.0
CG A:HIS116 4.1 6.8 1.0
NE2 A:HIS118 4.1 8.4 1.0
ND1 A:HIS192 4.2 7.9 1.0
CG A:HIS192 4.2 7.2 1.0
CD2 A:HIS118 4.2 9.2 1.0
O4 A:PO4405 4.3 11.2 0.9
OD1 A:ASP120 4.3 10.0 1.0
HG2 A:GLN121 4.5 11.9 1.0
HG A:SER214 4.5 10.0 1.0
O3 A:PO4405 4.6 15.6 0.9
HB3 A:SER214 4.6 10.6 1.0
HG3 A:GLN121 4.7 11.9 1.0
HZ3 A:LYS260 4.8 17.5 1.0
HD1 A:HIS116 4.8 9.5 1.0
HB2 A:SER214 4.9 10.6 1.0
HG A:LEU193 4.9 9.3 1.0
HD21 A:ASN259 4.9 14.2 1.0
HE2 A:HIS118 4.9 10.1 1.0
HD1 A:HIS192 4.9 9.5 1.0
CA A:HIS118 4.9 6.9 1.0
HZ2 A:LYS260 5.0 17.5 1.0

Reference:

M.Monteiro Pedroso, D.Waite, M.Natasa, R.Mcgeary, L.Guddat, P.Hugenholtz, G.Schenk. Evolution and Diversity of B3-Type Metallo-Beta-Lactamases, Emerging Contributors to the Spread of Antibiotic Resistance. To Be Published.
Page generated: Wed Dec 16 11:40:53 2020

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