Atomistry » Zinc » PDB 6dbx-6dps » 6ddr
Atomistry »
  Zinc »
    PDB 6dbx-6dps »
      6ddr »

Zinc in PDB 6ddr: Crystal Structure Analysis of the Epitope of An Anti-Mica Antibody

Protein crystallography data

The structure of Crystal Structure Analysis of the Epitope of An Anti-Mica Antibody, PDB code: 6ddr was solved by M.L.Matsumoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.549, 61.833, 172.368, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 24.7

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure Analysis of the Epitope of An Anti-Mica Antibody (pdb code 6ddr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure Analysis of the Epitope of An Anti-Mica Antibody, PDB code: 6ddr:

Zinc binding site 1 out of 1 in 6ddr

Go back to Zinc Binding Sites List in 6ddr
Zinc binding site 1 out of 1 in the Crystal Structure Analysis of the Epitope of An Anti-Mica Antibody


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure Analysis of the Epitope of An Anti-Mica Antibody within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn304

b:33.6
occ:1.00
O C:HOH404 2.0 38.4 1.0
NE2 C:HIS248 2.6 41.9 1.0
CD2 C:HIS248 3.0 40.8 1.0
O C:HOH401 3.7 53.4 1.0
CE1 C:HIS248 3.7 40.8 1.0
OD1 C:ASP249 3.8 45.1 1.0
CG C:HIS248 4.3 38.9 1.0
ND1 C:HIS248 4.5 39.1 1.0
CG C:ASP249 4.5 45.0 1.0
OD2 C:ASP249 4.6 46.3 1.0

Reference:

T.N.Lombana, M.L.Matsumoto, A.M.Berkley, E.Toy, R.Cook, Y.Gan, C.Du, P.Schnier, W.Sandoval, Z.Ye, J.M.Schartner, J.Kim, C.Spiess. High-Resolution Glycosylation Site-Engineering Method Identifies Mica Epitope Critical For Shedding Inhibition Activity of Anti-Mica Antibodies. Mabs V. 11 75 2019.
ISSN: ESSN 1942-0870
PubMed: 30307368
DOI: 10.1080/19420862.2018.1532767
Page generated: Wed Dec 16 11:39:52 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy