Zinc in PDB 6ddr: Crystal Structure Analysis of the Epitope of An Anti-Mica Antibody

The structure of Crystal Structure Analysis of the Epitope of An Anti-Mica Antibody, PDB code: 6ddr was solved by M.L.Matsumoto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.00 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.549, 61.833, 172.368, 90.00, 90.00, 90.00
R / Rfree (%)	20.8 / 24.7

The binding sites of Zinc atom in the Crystal Structure Analysis of the Epitope of An Anti-Mica Antibody (pdb code 6ddr). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure Analysis of the Epitope of An Anti-Mica Antibody, PDB code: 6ddr:

Zinc binding site 1 out of 1 in the Crystal Structure Analysis of the Epitope of An Anti-Mica Antibody


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure Analysis of the Epitope of An Anti-Mica Antibody within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn304 b:33.6 occ:1.00 O C:HOH404 2.0 38.4 1.0 NE2 C:HIS248 2.6 41.9 1.0 CD2 C:HIS248 3.0 40.8 1.0 O C:HOH401 3.7 53.4 1.0 CE1 C:HIS248 3.7 40.8 1.0 OD1 C:ASP249 3.8 45.1 1.0 CG C:HIS248 4.3 38.9 1.0 ND1 C:HIS248 4.5 39.1 1.0 CG C:ASP249 4.5 45.0 1.0 OD2 C:ASP249 4.6 46.3 1.0

T.N.Lombana, M.L.Matsumoto, A.M.Berkley, E.Toy, R.Cook, Y.Gan, C.Du, P.Schnier, W.Sandoval, Z.Ye, J.M.Schartner, J.Kim, C.Spiess. High-Resolution Glycosylation Site-Engineering Method Identifies Mica Epitope Critical For Shedding Inhibition Activity of Anti-Mica Antibodies. Mabs V. 11 75 2019.
ISSN: ESSN 1942-0870
PubMed: 30307368
DOI: 10.1080/19420862.2018.1532767