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Zinc in PDB 6d6r: Human Nuclear Exosome-MTR4 Rna Complex - Composite Map After Focused Reconstruction

Enzymatic activity of Human Nuclear Exosome-MTR4 Rna Complex - Composite Map After Focused Reconstruction

All present enzymatic activity of Human Nuclear Exosome-MTR4 Rna Complex - Composite Map After Focused Reconstruction:
3.6.4.13;

Other elements in 6d6r:

The structure of Human Nuclear Exosome-MTR4 Rna Complex - Composite Map After Focused Reconstruction also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Human Nuclear Exosome-MTR4 Rna Complex - Composite Map After Focused Reconstruction (pdb code 6d6r). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Human Nuclear Exosome-MTR4 Rna Complex - Composite Map After Focused Reconstruction, PDB code: 6d6r:

Zinc binding site 1 out of 1 in 6d6r

Go back to Zinc Binding Sites List in 6d6r
Zinc binding site 1 out of 1 in the Human Nuclear Exosome-MTR4 Rna Complex - Composite Map After Focused Reconstruction


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human Nuclear Exosome-MTR4 Rna Complex - Composite Map After Focused Reconstruction within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Zn1001

b:98.2
occ:1.00
NE2 K:HIS159 1.9 78.0 1.0
SG K:CYS31 2.3 75.5 1.0
SG K:CYS39 2.3 98.0 1.0
SG K:CYS36 2.4 92.8 1.0
CE1 K:HIS159 2.6 78.0 1.0
CD2 K:HIS159 2.9 78.0 1.0
CB K:CYS36 3.0 92.8 1.0
CB K:CYS39 3.1 98.0 1.0
CB K:CYS31 3.2 75.5 1.0
ND1 K:HIS159 3.7 78.0 1.0
CG K:HIS159 3.8 78.0 1.0
O K:CYS36 4.1 92.8 1.0
N K:CYS31 4.2 75.5 1.0
CA K:CYS36 4.3 92.8 1.0
CA K:CYS31 4.3 75.5 1.0
CA K:CYS39 4.6 98.0 1.0
C K:CYS36 4.6 92.8 1.0
N K:CYS39 4.9 98.0 1.0

Reference:

E.M.Weick, M.R.Puno, K.Januszyk, J.C.Zinder, M.A.Dimattia, C.D.Lima. Helicase-Dependent Rna Decay Illuminated By A Cryo-Em Structure of A Human Nuclear Rna Exosome-MTR4 Complex. Cell V. 173 1663 2018.
ISSN: ISSN 1097-4172
PubMed: 29906447
DOI: 10.1016/J.CELL.2018.05.041
Page generated: Wed Dec 16 11:39:16 2020

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